Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nippostrongylus_20brasiliensis_20[genbank_20GCA_5F000951335.1_202014 -09-26] 29,375 sequences; 294,400,206 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq7726 89.7 5e-13 seq12672 86.0 6e-12 seq2779 84.2 2e-11 seq17 84.2 2e-11 >seq7726 Length=8395 Score = 89.7 bits (98), Expect = 5e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 ||||| || |||| | ||||||||||| || || || || || ||||||||||| | Sbjct 2447 CCTGCGAAGATCAGTCTTTGCTGATCGGGTGGGATTCCCTCCTTGTCTTGAATTTTAGCT 2388 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || || || | || || || | |||||| ||||| ||||| ||||| || |||| Sbjct 2387 TTCACATTCTCAATGGTATCAGAAGCTTCCACCTCGAGGGTAATAGTTTTGCCTGTTAGC 2328 Query 134694 GTTTTAACGAAAATTTGCATTTTG 134717 || || |||||||| |||||| || Sbjct 2327 GTCTTTACGAAAATCTGCATTGTG 2304 Score = 82.4 bits (90), Expect = 8e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || || || ||||| ||||||||||| || || || ||||| || || || || ||| Sbjct 3043 CCGGCGAAGATCAATCGCTGCTGATCTGGTGGAATTCCTTCCTTGTCCTGGATCTTTGCC 2984 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || || || | ||||| |||| ||| || |||||||| |||||||| ||||| | Sbjct 2983 TTAACATTTTCGATGGTGTCCGACGCTTCAACTTCGAGAGTGATGGTTTTTCCGGTGAGG 2924 Query 134694 GTTTTAACGAAAATTTGCAT 134713 || || || || || ||||| Sbjct 2923 GTCTTGACAAAGATCTGCAT 2904 >seq12672 Length=3626 Score = 86.0 bits (94), Expect = 6e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || ||| |||| | ||||||||||||||||| || ||||| || ||||||| ||| | Sbjct 2858 CCGGCATAAATAATTCGCTGCTGATCGGGCGGAATCCCTTCCTTGTCTTGAACTTTCAAT 2917 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || || |||| |||||| | || || ||||| || || || || ||||| | | Sbjct 2918 TTCACATTTTCCACAGTGTCGACGGGCTCGACTTCGAGTGTGATAGTCTTTCCGGTGAGA 2977 Query 134694 GTTTTAACGAAAATTTGCAT 134713 ||||| ||||||| ||||| Sbjct 2978 GTTTTGACGAAAACCTGCAT 2997 >seq2779 Length=25375 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || || || ||||| ||||||||||| || || || || || || || || || || Sbjct 20765 CCGGCGAAGATCAATCGCTGCTGATCTGGAGGGATACCCTCCTTATCCTGGATCTTGGCC 20824 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 ||||| || | |||||||| | ||||| ||||| || |||||||| || || | | Sbjct 20825 TTGACATTCTCGATCGTGTCGGAGGCCTCCACCTCGAGGGTGATGGTTTTGCCCGTGAGA 20884 Query 134694 GTTTTAACGAAAATTTGCATT 134714 || || ||||| ||||||||| Sbjct 20885 GTCTTCACGAAGATTTGCATT 20905 >seq17 Length=262609 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 ||||| || || | ||||||||||| ||||| || || || || || ||||| ||| | Sbjct 67095 CCTGCGAAGATAAGCCGCTGCTGATCTGGCGGAATACCCTCCTTGTCCTGAATCTTTGCT 67036 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || || || | ||||| || | ||| || || || || ||||| || || |||| | Sbjct 67035 TTCACGTTCTCAATAGTGTCCGATGCTTCGACTTCAAGCGTGATGGTCTTTCCCGTTAGA 66976 Query 134694 GTTTTAACGAAAATTTGCATT 134714 || || || |||||||||||| Sbjct 66975 GTCTTGACAAAAATTTGCATT 66955 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 ||||||||||| | |||||||| || || ||||| || || || ||||| || || | Sbjct 68141 CCTGCAAAAATGAGTCGCTGCTGGTCAGGTGGTATTCCCTCCTTGTCTTGGATCTTCGCT 68082 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || || || | ||||| |||| ||| || || || || ||||| || || || | Sbjct 68081 TTTACATTTTCAATCGTGTCAGACGCTTCAACCTCAAGCGTGATGGTCTTTCCAGTGAGT 68022 Query 134694 GTTTTAACGAAAATTTGCATT 134714 ||||| || |||||||||||| Sbjct 68021 GTTTTCACAAAAATTTGCATT 68001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505212824025000