Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nippostrongylus_20brasiliensis_20[genbank_20GCA_5F000951335.1_202014 -09-26] 29,375 sequences; 294,400,206 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq636 125 1e-23 >seq636 Length=76548 Score = 125 bits (138), Expect = 1e-23 Identities = 198/281 (70%), Gaps = 2/281 (1%) Strand=Plus/Plus Query 69689 ACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTAT 69748 |||| | ||| |||| |||||| || || | ||| ||||| | ||||||||| || | Sbjct 21169 ACTCGAAAATGTCAGCATGCCACGGCTCCAAATAGATCGCAAACGCTCCCGGTCTCTTGT 21228 Query 69749 TTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATAC 69808 | || |||||||| | || | ||||||||||| ||||| | ||||| ||||| | || Sbjct 21229 TACCGCCCTGATCCACATAACGAGCAGTGTTATTGTAGACGCGAAGCATAGGAATCAGAC 21288 Query 69809 CATTAGATTTACCATTTGTTCCAGAAATATAAC-TTCCTCTTGCGCGAATATTACTAATA 69867 | || || | || || ||||| | ||| |||| ||| | || ||||| ||| || | Sbjct 21289 CGTTGGAGGTGCCGTTCGTTCCGGCAAT-TAACGATCCCGTGGCACGAATCTTATGAACA 21347 Query 69868 GATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATAT 69927 ||| || || ||||| || | || ||||| || ||||| | ||||| |||||||| Sbjct 21348 TTTAGGCCGATGCCTCCGGCACTCTTCGAGATCAGGGCACACTGCTTCAACGTGTCATAG 21407 Query 69928 ATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACA 69968 || || | || ||| || ||||| | || || || || Sbjct 21408 ATTCCAGCGATCGAATCCTCACTCATGGTCAGCAGGAAGCA 21448 Score = 107 bits (118), Expect = 3e-18 Identities = 137/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 68652 ATTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATT 68711 ||| || |||||||||| |||||| ||| ||| || | | || ||||||||||| Sbjct 18592 ATTTTTCATCTCATCATCCCACAAGTTTAACTCGACCAAGTCCTTCAGCAGATGCGGATT 18651 Query 68712 AACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTC 68771 || ||||| || || ||||| | |||||| ||| |||| || || || || || || Sbjct 18652 GACAATTTGGAAGTCACCAGAAAGCACTCTTCGACTGTAGATGTTCGAAGTGTAAGGCTC 18711 Query 68772 CACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAA 68831 | || || || || || ||||||||||| || || || |||||||| || ||||| | Sbjct 18712 AATGGACTCGTTGTTGCCGAGAATTTGAGCGGTGGACGCCGTTGGCATTGGGGCCACTAG 18771 Query 68832 TAAACTATT 68840 ||||| || Sbjct 18772 CAAACTGTT 18780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686656575675000