Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nippostrongylus_20brasiliensis_20[genbank_20GCA_5F000951335.1_202014 -09-26] 29,375 sequences; 294,400,206 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq17 131 5e-25 seq7726 120 9e-22 seq20723 118 3e-21 seq28266 114 4e-20 seq87 105 2e-17 >seq17 Length=262609 Score = 131 bits (144), Expect = 5e-25 Identities = 113/140 (81%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 ||||||||||| || || || || || |||||||||||||| |||||||| || || || Sbjct 66742 CCAGCAAAGATGAGTCGCTGTTGGTCTGGAGGAATTCCTTCCTTATCCTGGATCTTCGCC 66683 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 || ||||| ||||| | |||||| | ||| ||||| || |||| ||||||||||| || Sbjct 66682 TTCACATTTTCAATAGTATCAGAAGCTTCTACTTCCAGCGTAATAGTCTTTCCGGTAAGA 66623 Query 140718 GTTTTTACAAAAATCTGCAT 140737 ||||| || ||||| ||||| Sbjct 66622 GTTTTGACGAAAATTTGCAT 66603 Score = 123 bits (136), Expect = 8e-23 Identities = 112/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 || ||||| || || || ||||| ||||| || ||||| || || || || || || ||| Sbjct 68141 CCTGCAAAAATGAGTCGCTGCTGGTCAGGTGGTATTCCCTCCTTGTCTTGGATCTTCGCT 68082 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 |||||||| ||||||| ||||| | |||||| ||||| || | |||||||| || ||| Sbjct 68081 TTTACATTTTCAATCGTGTCAGACGCTTCAACCTCAAGCGTGATGGTCTTTCCAGTGAGT 68022 Query 140718 GTTTTTACAAAAATCTGCATT 140738 ||||| |||||||| |||||| Sbjct 68021 GTTTTCACAAAAATTTGCATT 68001 Score = 105 bits (116), Expect = 2e-17 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 || |||||||| || | |||||||| || ||||||||||| || || || || |||| Sbjct 66459 CCGGCAAAGATGAGTCTCTGCTGATCTGGTGGAATTCCTTCCTTGTCTTGGATCTTAGAC 66400 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 ||||| || || || | || || | ||||||||| ||||| | || || ||||| || Sbjct 66399 TTTACGTTTTCGATTGTGTCGGAGGCTTCAACTTCGAGTGTGATCGTTTTCCCGGTGAGA 66340 Query 140718 GTTTTTACAAAAATCTGCATT 140738 ||||| || |||||||||||| Sbjct 66339 GTTTTCACGAAAATCTGCATT 66319 Score = 105 bits (116), Expect = 2e-17 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 |||||||| || || || || || ||||| ||||||||||| ||||| |||||||| ||| Sbjct 68425 CCAGCAAAAATGAGCCGCTGTTGGTCAGGTGGAATTCCTTCCTTATCTTGAATTTTTGCT 68366 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 || ||||| ||||| | || || | || || || | || | ||| || || || | | Sbjct 68365 TTAACATTCTCAATGGTGTCCGACGCCTCCACCTCCAACGTTATTGTTTTCCCAGTCAAT 68306 Query 140718 GTTTTTACAAAAATCTGCATT 140738 || || ||||||||||||||| Sbjct 68305 GTCTTGACAAAAATCTGCATT 68285 Score = 102 bits (112), Expect = 2e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 ||||||||||| ||||| |||||||| || ||||| ||||| || || || || || || Sbjct 68747 CCAGCAAAGATGAGACGCTGCTGATCTGGGGGAATCCCTTCCTTGTCTTGGATCTTGGCC 68688 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 || ||||| || | | || || | || || ||||| || | ||||||||||| || Sbjct 68687 TTGACATTTTCGACGGTGTCCGAAGCCTCCACCTCAAGCGTGATCGTCTTTCCGGTCAGG 68628 Query 140718 GTTTTTACAAAAATCTGCATT 140738 || || ||||| ||||||||| Sbjct 68627 GTCTTCACAAAGATCTGCATT 68607 >seq7726 Length=8395 Score = 120 bits (132), Expect = 9e-22 Identities = 111/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 || || ||||| || | ||||||||| || || ||||| || || || |||||||||||| Sbjct 2447 CCTGCGAAGATCAGTCTTTGCTGATCGGGTGGGATTCCCTCCTTGTCTTGAATTTTAGCT 2388 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 || ||||| ||||| | |||||| | ||| || || || |||| || || || ||||| Sbjct 2387 TTCACATTCTCAATGGTATCAGAAGCTTCCACCTCGAGGGTAATAGTTTTGCCTGTTAGC 2328 Query 140718 GTTTTTACAAAAATCTGCATT 140738 || ||||| |||||||||||| Sbjct 2327 GTCTTTACGAAAATCTGCATT 2307 Score = 118 bits (130), Expect = 3e-21 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654 || ||||||||||| | ||||||||||| || || |||||||| || |||||||| || Sbjct 4828 TTACCAGCAAAGATCAATCGTTGCTGATCTGGTGGGATTCCTTCCTTGTCCTGAATCTTC 4769 Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714 ||||| ||||| || || | || || | ||||||||| || || | ||||||||||| Sbjct 4768 GCTTTGACATTTTCGATTGTGTCGGAAGCTTCAACTTCGAGGGTGATGGTCTTTCCGGTG 4709 Query 140715 AGTGTTTTTACAAAAATCTGCAT 140737 || || || || || |||||||| Sbjct 4708 AGCGTCTTCACGAATATCTGCAT 4686 Score = 114 bits (126), Expect = 4e-20 Identities = 110/141 (78%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 ||||| ||||| | | |||||||||||| || |||||||| || |||||||| || ||| Sbjct 3932 CCAGCGAAGATCAATCTTTGCTGATCAGGTGGGATTCCTTCCTTGTCCTGAATCTTGGCT 3873 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 || ||||| ||||||| || || | ||| |||||||| || | || || || || || Sbjct 3872 TTGACATTCTCAATCGTGTCCGAAGCTTCGACTTCAAGGGTGATGGTTTTCCCAGTGAGG 3813 Query 140718 GTTTTTACAAAAATCTGCATT 140738 ||||| || || ||||||||| Sbjct 3812 GTTTTCACGAAGATCTGCATT 3792 Score = 109 bits (120), Expect = 2e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 ||||| || || | ||||| ||||| || ||||||||||| || ||||| || ||||| Sbjct 3636 CCAGCGAAAATCAATCGTTGTTGATCTGGTGGAATTCCTTCCTTGTCCTGGATCTTAGCC 3577 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 || ||||| || || | || || | |||||||| || || | ||||||||||| || Sbjct 3576 TTGACATTTTCGATTGTGTCGGAGGCCTCAACTTCGAGCGTGATGGTCTTTCCGGTGAGG 3517 Query 140718 GTTTTTACAAAAATCTGCAT 140737 || || |||||||||||||| Sbjct 3516 GTCTTGACAAAAATCTGCAT 3497 Score = 109 bits (120), Expect = 2e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 ||||||||||| | || |||||||| || || |||||||| || ||||| || || || Sbjct 4527 CCAGCAAAGATCAATCGCTGCTGATCTGGTGGGATTCCTTCCTTGTCCTGGATCTTTGCC 4468 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 || ||||| || |||| ||| || | ||||| || || || | |||||||| || || Sbjct 4467 TTAACATTTTCGATCGTATCGGAGGCCTCAACCTCGAGGGTGATCGTCTTTCCTGTGAGG 4408 Query 140718 GTTTTTACAAAAATCTGCAT 140737 ||||| || ||||||||||| Sbjct 4407 GTTTTGACGAAAATCTGCAT 4388 Score = 104 bits (114), Expect = 7e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 || || ||||| | || |||||||| || ||||| ||||| || ||||| || |||||| Sbjct 3340 CCGGCGAAGATCAACCGCTGCTGATCTGGTGGAATACCTTCCTTGTCCTGGATCTTAGCT 3281 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 || ||||| || |||| || || | ||||||||||| || | |||||||| || || Sbjct 3280 TTCACATTTTCGATCGTGTCGGAGGCCTCAACTTCAAGCGTGATGGTCTTTCCTGTGAGG 3221 Query 140718 GTTTTTACAAAAATCTGCAT 140737 || || || || |||||||| Sbjct 3220 GTCTTCACGAAGATCTGCAT 3201 Score = 102 bits (112), Expect = 2e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 || |||||||| | ||||||||||| || || |||||||| || || || || || ||| Sbjct 4231 CCGGCAAAGATCAACCGTTGCTGATCTGGTGGGATTCCTTCCTTGTCTTGGATCTTGGCT 4172 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 || ||||| ||||||| || || | ||| || ||||| || | || || || || || Sbjct 4171 TTGACATTCTCAATCGTGTCCGAAGCTTCGACCTCAAGGGTGATGGTTTTCCCAGTGAGG 4112 Query 140718 GTTTTTACAAAAATCTGCATT 140738 ||||| || || ||||||||| Sbjct 4111 GTTTTCACGAAGATCTGCATT 4091 Score = 100 bits (110), Expect = 9e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 || || ||||| | || |||||||| || ||||||||||| || ||||| || || || Sbjct 3043 CCGGCGAAGATCAATCGCTGCTGATCTGGTGGAATTCCTTCCTTGTCCTGGATCTTTGCC 2984 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 || ||||| || || | || || | ||||||||| || || | || |||||||| || Sbjct 2983 TTAACATTTTCGATGGTGTCCGACGCTTCAACTTCGAGAGTGATGGTTTTTCCGGTGAGG 2924 Query 140718 GTTTTTACAAAAATCTGCAT 140737 || || ||||| |||||||| Sbjct 2923 GTCTTGACAAAGATCTGCAT 2904 >seq20723 Length=1367 Score = 118 bits (130), Expect = 3e-21 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654 || ||||||||||| | ||||||||||| || || |||||||| || |||||||| || Sbjct 465 TTACCAGCAAAGATCAATCGTTGCTGATCTGGTGGGATTCCTTCCTTGTCCTGAATCTTC 406 Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714 ||||| ||||| || || | || || | ||||||||| || || | ||||||||||| Sbjct 405 GCTTTGACATTTTCGATTGTGTCGGAAGCTTCAACTTCGAGGGTGATGGTCTTTCCGGTG 346 Query 140715 AGTGTTTTTACAAAAATCTGCAT 140737 || || || || || |||||||| Sbjct 345 AGCGTCTTCACGAATATCTGCAT 323 Score = 95.1 bits (104), Expect = 4e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 || || ||||| | || |||||||| || || ||||| || || ||||| || || || Sbjct 166 CCGGCGAAGATCAATCGCTGCTGATCTGGTGGGATTCCCTCCTTGTCCTGGATCTTGGCC 107 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 || ||||| || || | ||| || | ||||| || || || | ||||||||| || || Sbjct 106 TTGACATTTTCGATTGTATCGGAGGCCTCAACCTCGAGGGTGATTGTCTTTCCTGTGAGG 47 Query 140718 GTTTTTACAAAAATCTGCAT 140737 ||||| || ||||||||||| Sbjct 46 GTTTTGACGAAAATCTGCAT 27 >seq28266 Length=552 Score = 114 bits (126), Expect = 4e-20 Identities = 110/141 (78%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 ||||| ||||| | | |||||||||||| || |||||||| || |||||||| || ||| Sbjct 324 CCAGCGAAGATCAATCTTTGCTGATCAGGTGGGATTCCTTCCTTGTCCTGAATCTTGGCT 265 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 || ||||| ||||||| || || | ||| |||||||| || | || || || || || Sbjct 264 TTGACATTCTCAATCGTGTCCGAAGCTTCGACTTCAAGGGTGATGGTTTTCCCAGTGAGG 205 Query 140718 GTTTTTACAAAAATCTGCATT 140738 ||||| || || ||||||||| Sbjct 204 GTTTTCACGAAGATCTGCATT 184 >seq87 Length=164798 Score = 105 bits (116), Expect = 2e-17 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 349532 CCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTA 349591 || ||||| ||||| ||||||| || || |||||||||||||| ||| ||||| | Sbjct 36485 CCGGAAGAGATTTCTGCAATGGTGTTGACGAAGATGAAGGAAATTGCCGAATCATATCTT 36544 Query 349592 GGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGT 349651 || | || | | || || | ||||| || ||||| ||||||||||| || || Sbjct 36545 GGCAAGGAGGTGAAACACGCAGTCGTCACTGTTCCGGCCTACTTTAATGATGCTCAACGA 36604 Query 349652 TCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAA 349711 || || || |||||||| | ||||| || ||||||| | |||| || || || Sbjct 36605 CAAGCCACGAAGGATGCTGGAACTATTGCTGGCCTAAATGTGGTTCGAATCATCAACGAG 36664 Query 349712 CCCACTGCTGCAGCAATTGCATATGG 349737 ||||| || || |||||||| ||||| Sbjct 36665 CCCACCGCGGCTGCAATTGCCTATGG 36690 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1514684107963125