Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nippostrongylus_20brasiliensis_20[genbank_20GCA_5F000951335.1_202014 -09-26] 29,375 sequences; 294,400,206 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq17 134 2e-26 seq7726 129 7e-25 seq20723 98.7 1e-15 seq2779 93.3 5e-14 >seq17 Length=262609 Score = 134 bits (148), Expect = 2e-26 Identities = 116/144 (81%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || ||||| || |||||||| ||||||||||| || || || || | | Sbjct 66603 ATGCAAATTTTCGTCAAAACTCTTACCGGAAAGACTATTACGCTGGAAGTAGAAGCTTCT 66662 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| |||| ||||||| || || ||||| ||||| ||||||||||||||||| Sbjct 66663 GATACTATTGAAAATGTGAAGGCGAAGATCCAGGATAAGGAAGGAATTCCTCCAGACCAA 66722 Query 27526 CAGCGTCTAATTTTTGCTGGTAAG 27549 ||||| || || ||||||||| || Sbjct 66723 CAGCGACTCATCTTTGCTGGTTAG 66746 Score = 122 bits (134), Expect = 1e-22 Identities = 115/147 (78%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| ||||| || || ||||| || |||||||| || ||||||||||| | Sbjct 66021 AATGCAAATTTTTGTGAAAACCCTTACTGGAAAGACTATCACGCTTGAGGTTGAAGCCTC 66080 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | |||| |||| | |||||||| || || |||||||| || ||||| || || || Sbjct 66081 TGACACGATTGAAAATGTAAAGGCTAAGATCCAAGACAAGGAAGGTATTCCACCGGATCA 66140 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCA 27551 |||||| || || ||||| ||| |||| Sbjct 66141 GCAGCGACTCATCTTTGCAGGTTAGCA 66167 Score = 118 bits (130), Expect = 1e-21 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||| ||||| || ||||| ||||| || || |||||||| ||| | Sbjct 68607 AATGCAGATCTTTGTGAAGACCCTGACCGGAAAGACGATCACGCTTGAGGTGGAGGCTTC 68666 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | | | | |||| | ||||| || || || |||||||| || ||||| ||||| || Sbjct 68667 GGACACCGTCGAAAATGTCAAGGCCAAGATCCAAGACAAGGAAGGGATTCCCCCAGATCA 68726 Query 27525 GCAGCGTCTAATTTTTGCTGGTA 27547 ||||||||| || |||||||||| Sbjct 68727 GCAGCGTCTCATCTTTGCTGGTA 68749 Score = 113 bits (124), Expect = 5e-20 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| ||||| || || || || || ||||| || || ||||||||||| | Sbjct 68001 AATGCAAATTTTTGTGAAAACACTCACTGGAAAGACCATCACGCTTGAGGTTGAAGCGTC 68060 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | |||| |||| | || || || || || |||||||||||||| || || ||||| Sbjct 68061 TGACACGATTGAAAATGTAAAAGCGAAGATCCAAGACAAGGAGGGAATACCACCTGACCA 68120 Query 27525 GCAGCGTCTAATTTTTGCTGGT 27546 |||||| || |||||||| ||| Sbjct 68121 GCAGCGACTCATTTTTGCAGGT 68142 Score = 109 bits (120), Expect = 6e-19 Identities = 111/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| ||||||||||| || || || ||||| || || ||||| || || || Sbjct 66955 AATGCAAATTTTTGTCAAGACTCTAACGGGAAAGACCATCACGCTTGAAGTCGAAGCATC 67014 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | |||| || |||| || || ||||||||||||||||| ||||| ||||| || Sbjct 67015 GGACACTATTGAGAACGTGAAAGCAAAGATTCAGGACAAGGAGGGTATTCCGCCAGATCA 67074 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAG 27549 |||||| || || || || ||| || Sbjct 67075 GCAGCGGCTTATCTTCGCAGGTTAG 67099 Score = 98.7 bits (108), Expect = 1e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || ||||||||||| | || || || || || || | ||||| ||| | Sbjct 68285 AATGCAGATTTTTGTCAAGACATTGACTGGGAAAACAATAACGTTGGAGGTGGAGGCGTC 68344 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||||| ||| | || || |||||||| || ||||| |||||||| || ||||| Sbjct 68345 GGACACCATTGAGAATGTTAAAGCAAAAATTCAAGATAAGGAAGGAATTCCACCTGACCA 68404 Query 27525 GCAGCGTCTAATTTTTGCTGGT 27546 ||||| || |||||||||||| Sbjct 68405 ACAGCGGCTCATTTTTGCTGGT 68426 >seq7726 Length=8395 Score = 129 bits (142), Expect = 7e-25 Identities = 115/144 (80%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| || ||||| |||||||| || |||||||||||| | Sbjct 2605 ATGCAAATCTTCGTCAAGACTCTCACCGGGAAGACTATCACACTTGAGGTTGAGGCTTCA 2664 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || | || ||||| || ||||||||||| ||||| || ||||||||| Sbjct 2665 GACACCATTGAGAACGTTAAAGCTAAGATCCAGGACAAGGAAGGAATCCCACCAGACCAG 2724 Query 27526 CAGCGTCTAATTTTTGCTGGTAAG 27549 ||||| || || || || |||||| Sbjct 2725 CAGCGACTGATCTTCGCAGGTAAG 2748 Score = 113 bits (124), Expect = 5e-20 Identities = 112/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || || || |||||||| || ||||| |||||||| || ||||| || | Sbjct 2307 AATGCAGATTTTCGTAAAGACGCTAACAGGCAAAACTATTACCCTCGAGGTGGAAGCTTC 2366 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| ||||| ||| |||| ||||||||||| |||||||||||||| || || || || Sbjct 2367 TGATACCATTGAGAATGTGAAAGCTAAAATTCAAGACAAGGAGGGAATCCCACCCGATCA 2426 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAG 27549 ||| | || || || || ||| || Sbjct 2427 GCAAAGACTGATCTTCGCAGGTCAG 2451 Score = 107 bits (118), Expect = 2e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| || ||||| || || || ||||| || ||||| | Sbjct 2904 ATGCAGATCTTTGTCAAGACCCTCACCGGAAAAACCATCACTCTCGAAGTTGAAGCGTCG 2963 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | |||| | ||||| || || ||||||||||| |||||||| ||||| ||| Sbjct 2964 GACACCATCGAAAATGTTAAGGCAAAGATCCAGGACAAGGAAGGAATTCCACCAGATCAG 3023 Query 27526 CAGCGTCTAATTTTTGCTGGTAAG 27549 ||||| | || || || ||| || Sbjct 3024 CAGCGATTGATCTTCGCCGGTTAG 3047 Score = 107 bits (118), Expect = 2e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||||||||| || ||||| ||||| || || || || |||||| | Sbjct 3497 ATGCAGATTTTTGTCAAGACCCTCACCGGAAAGACCATCACGCTCGAAGTTGAGGCCTCC 3556 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | |||| | |||||||| || ||||||||||| |||||||| ||||| || Sbjct 3557 GACACAATCGAAAATGTCAAGGCTAAGATCCAGGACAAGGAAGGAATTCCACCAGATCAA 3616 Query 27526 CAGCGTCTAATTTTTGCTGGTAAG 27549 || || | ||||| |||||| || Sbjct 3617 CAACGATTGATTTTCGCTGGTGAG 3640 Score = 102 bits (112), Expect = 9e-17 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || ||||| || || || || ||||| || || || ||||||||| | Sbjct 4388 ATGCAGATTTTCGTCAAAACCCTCACAGGAAAGACGATCACCCTCGAGGTTGAGGCCTCC 4447 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | |||| | ||||| || || ||||||||||| ||||| || ||||| ||| Sbjct 4448 GATACGATCGAAAATGTTAAGGCAAAGATCCAGGACAAGGAAGGAATCCCACCAGATCAG 4507 Query 27526 CAGCGTCTAATTTTTGCTGGTAAG 27549 ||||| | || ||||||||| || Sbjct 4508 CAGCGATTGATCTTTGCTGGTTAG 4531 Score = 98.7 bits (108), Expect = 1e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || || || ||||| || || ||||| |||||| | Sbjct 3201 ATGCAGATCTTCGTGAAGACCCTCACAGGAAAGACCATCACGCTTGAAGTTGAGGCCTCC 3260 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | |||| |||| ||||| || ||||||||||| || ||||| ||||| ||| Sbjct 3261 GACACGATCGAAAATGTGAAAGCTAAGATCCAGGACAAGGAAGGTATTCCACCAGATCAG 3320 Query 27526 CAGCGTCTAATTTTTGCTGGTAAG 27549 ||||| | || || || ||| || Sbjct 3321 CAGCGGTTGATCTTCGCCGGTTAG 3344 Score = 98.7 bits (108), Expect = 1e-15 Identities = 110/147 (75%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || |||||||| ||||| ||||| || || || || ||||| | Sbjct 4686 ATGCAGATATTCGTGAAGACGCTCACCGGAAAGACCATCACCCTCGAAGTTGAAGCTTCC 4745 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | |||| | || || || |||||||||||||| ||||| || ||||| ||| Sbjct 4746 GACACAATCGAAAATGTCAAAGCGAAGATTCAGGACAAGGAAGGAATCCCACCAGATCAG 4805 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAA 27552 || || | || |||||||||||| || Sbjct 4806 CAACGATTGATCTTTGCTGGTAAGTAA 4832 >seq20723 Length=1367 Score = 98.7 bits (108), Expect = 1e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || ||||| || || || || ||||| || || || ||||||||| | Sbjct 27 ATGCAGATTTTCGTCAAAACCCTCACAGGAAAGACAATCACCCTCGAGGTTGAGGCCTCC 86 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | |||| | ||||| || || ||||||||||||||||| || ||||| ||| Sbjct 87 GATACAATCGAAAATGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCACCAGATCAG 146 Query 27526 CAGCGTCTAATTTTTGCTGGTAAG 27549 ||||| | || || || ||| || Sbjct 147 CAGCGATTGATCTTCGCCGGTTAG 170 Score = 98.7 bits (108), Expect = 1e-15 Identities = 110/147 (75%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || |||||||| ||||| ||||| || || || || ||||| | Sbjct 323 ATGCAGATATTCGTGAAGACGCTCACCGGAAAGACCATCACCCTCGAAGTTGAAGCTTCC 382 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | |||| | || || || |||||||||||||| ||||| || ||||| ||| Sbjct 383 GACACAATCGAAAATGTCAAAGCGAAGATTCAGGACAAGGAAGGAATCCCACCAGATCAG 442 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAA 27552 || || | || |||||||||||| || Sbjct 443 CAACGATTGATCTTTGCTGGTAAGTAA 469 Score = 86.0 bits (94), Expect = 7e-12 Identities = 82/104 (79%), Gaps = 2/104 (2%) Strand=Plus/Plus Query 27531 TCTAATTT--TTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTC 27588 ||| |||| || | ||||||||||||||||||| ||||| || | ||||| || || Sbjct 218 TCTTATTTCATTTCAGGTAAGCAACTCGAGGATGGACGTACTCTGTCCGACTACAACATC 277 Query 27589 CAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || |||||||| || |||||||| ||| | |||||||| || || Sbjct 278 CAGAAGGAATCTACCCTTCATCTCGTCCTTCGTCTTCGTGGAGG 321 >seq2779 Length=25375 Score = 93.3 bits (102), Expect = 5e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 27404 TAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAG 27463 ||||||||||||| || ||||| || || ||||| || || || || ||||| ||| | Sbjct 20906 TAATGCAAATCTTCGTGAAGACTCTCACGGGCAAAACCATCACCCTCGAGGTGGAGGCCT 20847 Query 27464 GTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACC 27523 || | || | ||| | ||||| || || ||||| |||||||| || |||||||| | Sbjct 20846 CCGACACGATCGAGAATGTCAAGGCCAAGATCCAGGATAAGGAGGGTATCCCTCCAGATC 20787 Query 27524 AGCAGCGTCTAATTTTTGCTGGTA 27547 ||||||| | || || || |||| Sbjct 20786 AGCAGCGATTGATCTTCGCCGGTA 20763 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570100989150000