Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nippostrongylus_20brasiliensis_20[genbank_20GCA_5F000951335.1_202014 -09-26] 29,375 sequences; 294,400,206 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq7726 95.1 1e-14 seq20723 93.3 4e-14 seq17 86.0 5e-12 >seq7726 Length=8395 Score = 95.1 bits (104), Expect = 1e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || ||||| || || || ||||| ||||||| || || |||||| | || Sbjct 2308 ATGCAGATTTTCGTAAAGACGCTAACAGGCAAAACTATTACCCTCGAGGTGGAAGCTTCT 2367 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| || ||| |||||||||||||| || || || ||||||||||| Sbjct 2368 GATACCATTGAGAATGTGAAAGCTAAAATTCAAGACAAGGAGGGAATCCCACCCGATCAG 2427 Query 27108 CA 27109 || Sbjct 2428 CA 2429 Score = 93.3 bits (102), Expect = 4e-14 Identities = 111/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||||||||| || || || || ||||| ||| | || || || ||||| ||| | || Sbjct 4685 CATGCAGATATTCGTGAAGACGCTCACCGGAAAGACCATCACCCTCGAAGTTGAAGCTTC 4744 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||| | || || | |||||| || ||||| ||||| ||||| || ||||| ||||| Sbjct 4745 CGACACAATCGAAAATGTCAAAGCGAAGATTCAGGACAAGGAAGGAATCCCACCAGATCA 4804 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTG 27137 || || || || | || || || ||||| Sbjct 4805 GCAACGATTGATCTTTGCTGGTAAGTAATTG 4835 >seq20723 Length=1367 Score = 93.3 bits (102), Expect = 4e-14 Identities = 111/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||||||||| || || || || ||||| ||| | || || || ||||| ||| | || Sbjct 322 CATGCAGATATTCGTGAAGACGCTCACCGGAAAGACCATCACCCTCGAAGTTGAAGCTTC 381 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||| | || || | |||||| || ||||| ||||| ||||| || ||||| ||||| Sbjct 382 CGACACAATCGAAAATGTCAAAGCGAAGATTCAGGACAAGGAAGGAATCCCACCAGATCA 441 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTG 27137 || || || || | || || || ||||| Sbjct 442 GCAACGATTGATCTTTGCTGGTAAGTAATTG 472 >seq17 Length=262609 Score = 86.0 bits (94), Expect = 5e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || |||| || || | || || | || ||||| |||| Sbjct 68286 ATGCAGATTTTTGTCAAGACATTGACTGGGAAAACAATAACGTTGGAGGTGGAGGCGTCG 68345 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| || ||| |||||||||||| || ||||| || ||||| || ||| Sbjct 68346 GACACCATTGAGAATGTTAAAGCAAAAATTCAAGATAAGGAAGGAATTCCACCTGACCAA 68405 Query 27108 CAGCG 27112 ||||| Sbjct 68406 CAGCG 68410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434758703400000