Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nippostrongylus_20brasiliensis_20[genbank_20GCA_5F000951335.1_202014 -09-26] 29,375 sequences; 294,400,206 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq7726 98.7 7e-16 seq17 96.9 2e-15 seq20723 82.4 5e-11 >seq7726 Length=8395 Score = 98.7 bits (108), Expect = 7e-16 Identities = 108/141 (77%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || |||||||| |||||||| ||||||||||||||||| | || Sbjct 2904 ATGCAGATCTTTGTCAAGACCCTCACCGGAAAAACCATCACTCTCGAAGTTGAAGCGTCG 2963 Query 23671 GACACTGTTG-AAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | | |||| |||| | ||| || ||||| ||||| | || |||||||| Sbjct 2964 GACACCATCGAAAATGTTAAGGC-AAAGATCCAGGACAAGGAAGGAATTCCACCAGATCA 3022 Query 23730 ACAGCGTTTAATATTTGCCGG 23750 ||||| || || || ||||| Sbjct 3023 GCAGCGATTGATCTTCGCCGG 3043 Score = 98.7 bits (108), Expect = 7e-16 Identities = 108/141 (77%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| ||||||||||| ||||| |||||||| ||||| ||||| || | Sbjct 4388 ATGCAGATTTTCGTCAAAACCCTCACAGGAAAGACGATCACCCTCGAGGTTGAGGCCTCC 4447 Query 23671 GACACTGTTG-AAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | | |||| |||| | ||| || ||||| ||||| | || |||||||| Sbjct 4448 GATACGATCGAAAATGTTAAGGC-AAAGATCCAGGACAAGGAAGGAATCCCACCAGATCA 4506 Query 23730 ACAGCGTTTAATATTTGCCGG 23750 ||||| || || ||||| || Sbjct 4507 GCAGCGATTGATCTTTGCTGG 4527 Score = 87.8 bits (96), Expect = 1e-12 Identities = 106/142 (75%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| ||||| ||||||||||| || ||||| ||||| || || || || | | Sbjct 4091 AATGCAGATCTTCGTGAAAACCCTCACTGGGAAAACCATCACCCTTGAGGTCGAAGCTTC 4150 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 |||||| |||| ||| | ||| | || || ||||| ||||| | || ||||||| Sbjct 4151 GGACACGATTGAGAATGTCAAAGC-CAAGATCCAAGACAAGGAAGGAATCCCACCAGATC 4209 Query 23729 AACAGCGTTTAATATTTGCCGG 23750 | || || || || |||||||| Sbjct 4210 AGCAACGGTTGATCTTTGCCGG 4231 Score = 82.4 bits (90), Expect = 5e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || |||||||| ||||| || ||||| ||||||||||| || | Sbjct 3497 ATGCAGATTTTTGTCAAGACCCTCACCGGAAAGACCATCACGCTCGAAGTTGAGGCCTCC 3556 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | |||| | || || || ||||| ||||| | || ||||||||| Sbjct 3557 GACACAATCGAAAATGTCAAGGCTAAGATCCAGGACAAGGAAGGAATTCCACCAGATCAA 3616 Query 23731 CAGCGTTTAATATTTGCCGG 23750 || || || || || || || Sbjct 3617 CAACGATTGATTTTCGCTGG 3636 Score = 82.4 bits (90), Expect = 5e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || ||||| ||||| || ||||| ||||||||||| | | Sbjct 4686 ATGCAGATATTCGTGAAGACGCTCACCGGAAAGACCATCACCCTCGAAGTTGAAGCTTCC 4745 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | |||| | ||| || ||| ||||| ||||| | || |||||||| Sbjct 4746 GACACAATCGAAAATGTCAAAGCGAAGATTCAGGACAAGGAAGGAATCCCACCAGATCAG 4805 Query 23731 CAGCGTTTAATATTTGCCGGCAA 23753 || || || || ||||| || || Sbjct 4806 CAACGATTGATCTTTGCTGGTAA 4828 >seq17 Length=262609 Score = 96.9 bits (106), Expect = 2e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||||||||| ||||| ||||| || ||||||||||| ||||||||||| || | Sbjct 66319 AATGCAGATTTTCGTGAAAACTCTCACCGGGAAAACGATCACACTCGAAGTTGAAGCCTC 66378 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | |||| |||| || || ||||| ||||| | || |||||||| Sbjct 66379 CGACACAATCGAAAACGTAAAGTCTAAGATCCAAGACAAGGAAGGAATTCCACCAGATCA 66438 Query 23730 ACAGCGTTTAATATTTGCCGG 23750 ||| | | || |||||||| Sbjct 66439 GCAGAGACTCATCTTTGCCGG 66459 Score = 84.2 bits (92), Expect = 1e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| ||||| || || || || |||||||| || ||||| || ||||| || | | Sbjct 66955 AATGCAAATTTTTGTCAAGACTCTAACGGGAAAGACCATCACGCTTGAAGTCGAAGCATC 67014 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||||| |||| | | ||| ||| ||| ||||| || ||| | ||||||||||| Sbjct 67015 GGACACTATTGAGAACGTGAAAGCAAAGATTCAGGACAAGGAGGGTATTCCGCCAGATCA 67074 Query 23730 ACAGCG 23735 ||||| Sbjct 67075 GCAGCG 67080 >seq20723 Length=1367 Score = 82.4 bits (90), Expect = 5e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| ||||||||||| ||||| || ||||| ||||| ||||| || | Sbjct 27 ATGCAGATTTTCGTCAAAACCCTCACAGGAAAGACAATCACCCTCGAGGTTGAGGCCTCC 86 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || | |||| | || || || ||||| || || | || |||||||| Sbjct 87 GATACAATCGAAAATGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCACCAGATCAG 146 Query 23731 CAGCGTTTAATATTTGCCGG 23750 ||||| || || || ||||| Sbjct 147 CAGCGATTGATCTTCGCCGG 166 Score = 82.4 bits (90), Expect = 5e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || ||||| ||||| || ||||| ||||||||||| | | Sbjct 323 ATGCAGATATTCGTGAAGACGCTCACCGGAAAGACCATCACCCTCGAAGTTGAAGCTTCC 382 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | |||| | ||| || ||| ||||| ||||| | || |||||||| Sbjct 383 GACACAATCGAAAATGTCAAAGCGAAGATTCAGGACAAGGAAGGAATCCCACCAGATCAG 442 Query 23731 CAGCGTTTAATATTTGCCGGCAA 23753 || || || || ||||| || || Sbjct 443 CAACGATTGATCTTTGCTGGTAA 465 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337888589922500