Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nippostrongylus_20brasiliensis_20[genbank_20GCA_5F000951335.1_202014 -09-26] 29,375 sequences; 294,400,206 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq6939 134 3e-26 seq17 107 5e-18 seq331 104 6e-17 seq7726 96.9 8e-15 >seq6939 Length=9702 Score = 134 bits (148), Expect = 3e-26 Identities = 204/288 (71%), Gaps = 8/288 (3%) Strand=Plus/Plus Query 7429 AAGGAACTGGAAACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATA 7488 ||||| | | ||| |||||||| | |||||| | || ||||| || || |||| Sbjct 6200 AAGGATATTGGAACTTTATATTTTTTGTTTGGTTTATGATCAGGTATAATTGGCACTAGT 6259 Query 7489 TTTTCTATGATTATAAGGTTAGAATTAGCTGCTCC-GGGTTCTCAAATATTGAGTGGTAA 7547 || ||| | ||||| | ||||| || ||| || ||| | | |||| ||||| Sbjct 6260 TTGTCTTTAATTATTCGTTTAGAGTTGGCTAAACCAGGGATTT----TATTA---GGTAA 6312 Query 7548 TAGCCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGT 7607 | | || |||||||| ||||||||| || ||||| || | |||||||| ||| | || Sbjct 6313 TGGTCAGCTTTACAATACTATTATTACAGCCCATGCTATTTTAATGATTTTTTTTATGGT 6372 Query 7608 TATGCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCC 7667 ||| || || || || ||||| || |||||| | | || |||||| | |||||||| Sbjct 6373 TATACCTAGAATAATTGGTGGTTTTGGTAATTGAATATTACCGTTAATGTTGGGTGCTCC 6432 Query 7668 TGATATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACC 7715 |||||| |||||| | | || ||| |||||||||||||| |||| Sbjct 6433 TGATATAAGTTTTCCTCGTTTAAATAATTTAAGTTTTTGATTATTACC 6480 Score = 86.0 bits (94), Expect = 1e-11 Identities = 82/104 (79%), Gaps = 1/104 (1%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 |||||| |||||||||||||| || ||||||||||||| | ||||| || || | Sbjct 6886 TTCAGGGTGACCAAAAAATCAAAACAAATGTTGATAAATTAAAGGATTCCCACCCGTTCT 6827 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA-AACA 370774 ||||||||||| |||||| ||||| | ||||||||| |||| Sbjct 6826 AGGATCAAAAAAAGAAGTATTTAAATTACGATCAGTTAATAACA 6783 >seq17 Length=262609 Score = 107 bits (118), Expect = 5e-18 Identities = 112/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 225568 TGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATC 225627 |||| || || ||||| ||||| || || || || |||||||||||||||||||||||| Sbjct 66167 TGCTAACCTGCAAAGATGAGTCGCTGCTGATCCGGTGGAATACCTTCCTTGTCTTGGATC 66108 Query 225628 TTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCC 225687 || ||| ||| ||| || ||||| |||| ||| || || | |||||| ||||| || Sbjct 66107 TTAGCCTTTACATTTTCAATCGTGTCAGAGGCTTCAACCTCAAGCGTGATAGTCTTTCCA 66048 Query 225688 GTCAAAGTTTTTATGAACACTTGCATT 225714 || | ||||| | || | ||||||| Sbjct 66047 GTAAGGGTTTTCACAAAAATTTGCATT 66021 Score = 102 bits (112), Expect = 2e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 ||||| ||||| || || || || || || ||||| |||||||||||||||||||| | Sbjct 68747 CCAGCAAAGATGAGACGCTGCTGATCTGGGGGAATCCCTTCCTTGTCTTGGATCTTGGCC 68688 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 || ||| ||||| |||||| || | ||||| || | |||||||||||| || |||| Sbjct 68687 TTGACATTTTCGACGGTGTCCGAAGCCTCCACCTCAAGCGTGATCGTCTTTCCGGTCAGG 68628 Query 225694 GTTTTTATGAACACTTGCATT 225714 || || | || | |||||| Sbjct 68627 GTCTTCACAAAGATCTGCATT 68607 Score = 96.9 bits (106), Expect = 8e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 || || ||||| |||| || || || || ||||| |||||||||||||||||||| | Sbjct 66459 CCGGCAAAGATGAGTCTCTGCTGATCTGGTGGAATTCCTTCCTTGTCTTGGATCTTAGAC 66400 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 || || |||||| ||||| |||| ||| || || | |||||||| || || || | | Sbjct 66399 TTTACGTTTTCGATTGTGTCGGAGGCTTCAACTTCGAGTGTGATCGTTTTCCCGGTGAGA 66340 Query 225694 GTTTTTATGAACACTTGCATT 225714 ||||| | ||| | |||||| Sbjct 66339 GTTTTCACGAAAATCTGCATT 66319 Score = 96.9 bits (106), Expect = 8e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 || ||||||||||| || || || || ||||||||||| |||||||| || |||||| Sbjct 67095 CCTGCGAAGATAAGCCGCTGCTGATCTGGCGGAATACCCTCCTTGTCCTGAATCTTTGCT 67036 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 ||||| || || ||||| || | ||| || || | |||||| ||||| ||||| | | Sbjct 67035 TTCACGTTCTCAATAGTGTCCGATGCTTCGACTTCAAGCGTGATGGTCTTTCCCGTTAGA 66976 Query 225694 GTTTTTATGAACACTTGCATT 225714 || || | || | ||||||| Sbjct 66975 GTCTTGACAAAAATTTGCATT 66955 Score = 84.2 bits (92), Expect = 5e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 || || || || ||||| || ||||| || || || || ||||||||||||||||| Sbjct 68141 CCTGCAAAAATGAGTCGCTGCTGGTCAGGTGGTATTCCCTCCTTGTCTTGGATCTTCGCT 68082 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 || ||| ||| || ||||| || | ||| || || | |||||| ||||| || || | Sbjct 68081 TTTACATTTTCAATCGTGTCAGACGCTTCAACCTCAAGCGTGATGGTCTTTCCAGTGAGT 68022 Query 225694 GTTTTTATGAACACTTGCATT 225714 ||||| | || | ||||||| Sbjct 68021 GTTTTCACAAAAATTTGCATT 68001 >seq331 Length=106106 Score = 104 bits (114), Expect = 6e-17 Identities = 183/266 (69%), Gaps = 7/266 (3%) Strand=Plus/Plus Query 7441 ACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGATT 7500 || |||||||| | |||||| | || ||||| || || |||| || ||| | ||| Sbjct 92690 ACTTTATATTTTTTGTTTGGTTTGTGATCAGGTATAATTGGCACTAGTTTATCTTTAATT 92749 Query 7501 ATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTAC 7560 || | |||| ||||||| || || ||| ||| ||||||| | || | || Sbjct 92750 ATTCGTTTAGTGTTAGCTGAACCTGG------AATTTTGCTTGGTAATGGTCAGCCTTGT 92803 Query 7561 AACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATG 7620 || |||||||||||| ||||| || | || ||||| ||| | ||||| || ||| Sbjct 92804 AATACTATTATTACGGCTCATGCTATTTTAATAATTTT-TTTATAGTTATACCAAGTATA 92862 Query 7621 ATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTT 7680 || || || || || |||||| | | |||||||| | ||||| || ||||| |||| Sbjct 92863 ATTGGTGGGTTTGGTAATTGAGTATTACCTTTAATATTAGGTGCCCCAGATATAAGTTTT 92922 Query 7681 CCAAGGCTTAACAATATAAGTTTTTG 7706 || | | || ||| ||||||||| Sbjct 92923 CCTCGTTTAAATAATTAAAGTTTTTG 92948 >seq7726 Length=8395 Score = 96.9 bits (106), Expect = 8e-15 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 |||||||| || | ||||||||| || || ||||| ||||||||||| |||||||| | Sbjct 3636 CCAGCGAAAATCAATCGTTGTTGATCTGGTGGAATTCCTTCCTTGTCCTGGATCTTAGCC 3577 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 || ||| |||||| ||||| |||| || || || | |||||| ||||| || || Sbjct 3576 TTGACATTTTCGATTGTGTCGGAGGCCTCAACTTCGAGCGTGATGGTCTTTCCGGT 3521 Score = 93.3 bits (102), Expect = 1e-13 Identities = 109/145 (75%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 ||| || |||||||| ||||| || ||||| || || || ||||||||||| |||||||| Sbjct 2748 CTTACCTGCGAAGATCAGTCGCTGCTGGTCTGGTGGGATTCCTTCCTTGTCCTGGATCTT 2689 Query 225630 TTGCTTCACAGCT-TCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCG 225688 |||| | | | || ||||||||||| | || || || | ||||| ||||| || | Sbjct 2688 A-GCTTTAACGTTCTCAATGGTGTCTGAAGCCTCAACCTCAAGTGTGATAGTCTTCCCGG 2630 Query 225689 TCAAAGTTTTTATGAACACTTGCAT 225713 | | ||| || | ||| | |||||| Sbjct 2629 TGAGAGTCTTGACGAAGATTTGCAT 2605 Score = 91.5 bits (100), Expect = 4e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 || |||||||| | || || || || || ||||||||||||||||| |||||||| Sbjct 3340 CCGGCGAAGATCAACCGCTGCTGATCTGGTGGAATACCTTCCTTGTCCTGGATCTTAGCT 3281 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 |||||| |||||| ||||| |||| || || || | |||||| ||||| || || | Sbjct 3280 TTCACATTTTCGATCGTGTCGGAGGCCTCAACTTCAAGCGTGATGGTCTTTCCTGTGAGG 3221 Query 225694 GTTTTTATGAACACTTGCAT 225713 || || | ||| | ||||| Sbjct 3220 GTCTTCACGAAGATCTGCAT 3201 Score = 91.5 bits (100), Expect = 4e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 ||||| ||||| | ||| || || || || || || ||||||||||| ||||||||| | Sbjct 4527 CCAGCAAAGATCAATCGCTGCTGATCTGGTGGGATTCCTTCCTTGTCCTGGATCTTTGCC 4468 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 || ||| |||||| || || |||| || || || | ||||||||||| || || | Sbjct 4467 TTAACATTTTCGATCGTATCGGAGGCCTCAACCTCGAGGGTGATCGTCTTTCCTGTGAGG 4408 Query 225694 GTTTTTATGAACACTTGCAT 225713 ||||| | ||| | ||||| Sbjct 4407 GTTTTGACGAAAATCTGCAT 4388 Score = 87.8 bits (96), Expect = 4e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 || |||||||| | ||| || || || || ||||| ||||||||||| ||||||||| | Sbjct 3043 CCGGCGAAGATCAATCGCTGCTGATCTGGTGGAATTCCTTCCTTGTCCTGGATCTTTGCC 2984 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 || ||| |||||||||||| || | ||| || || | ||||| || || || || Sbjct 2983 TTAACATTTTCGATGGTGTCCGACGCTTCAACTTCGAGAGTGATGGTTTTTCCGGT 2928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192082370386250