Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nippostrongylus_20brasiliensis_20[genbank_20GCA_5F000951335.1_202014 -09-26] 29,375 sequences; 294,400,206 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq636 134 2e-26 >seq636 Length=76548 Score = 134 bits (148), Expect = 2e-26 Identities = 200/281 (71%), Gaps = 2/281 (1%) Strand=Plus/Plus Query 76692 ACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTAT 76751 |||| | ||| |||| |||||| || || | ||| ||||| | | ||||||| || | Sbjct 21169 ACTCGAAAATGTCAGCATGCCACGGCTCCAAATAGATCGCAAACGCTCCCGGTCTCTTGT 21228 Query 76752 TACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGC 76811 |||| |||||||| | ||| | ||||||||||| || || | | ||| ||||| | | Sbjct 21229 TACCGCCCTGATCCACATAACGAGCAGTGTTATTGTAGACGCGAAGCATAGGAATCAGAC 21288 Query 76812 CGTTAGATGTACCATTTGTTCCAGAAATATAAC-TTCCACATGCACGAATATTACTAATA 76870 |||| || || || || ||||| | ||| |||| ||| |||||||| ||| || | Sbjct 21289 CGTTGGAGGTGCCGTTCGTTCCGGCAAT-TAACGATCCCGTGGCACGAATCTTATGAACA 21347 Query 76871 GATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAG 76930 |||||| || ||||| || | || ||||| || ||||| | ||||| ||||||||| Sbjct 21348 TTTAGGCCGATGCCTCCGGCACTCTTCGAGATCAGGGCACACTGCTTCAACGTGTCATAG 21407 Query 76931 ATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACA 76971 || || | || ||| || ||||| | || || || || Sbjct 21408 ATTCCAGCGATCGAATCCTCACTCATGGTCAGCAGGAAGCA 21448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712672619400000