Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nippostrongylus_20brasiliensis_20[genbank_20GCA_5F000951335.1_202014 -09-26] 29,375 sequences; 294,400,206 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq7726 105 2e-17 seq28266 102 2e-16 seq2779 93.3 1e-13 seq17 84.2 5e-11 >seq7726 Length=8395 Score = 105 bits (116), Expect = 2e-17 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || || |||||||| || | ||||||||| | | |||||||||||| || || || || Sbjct 2747 TTACCTGCGAAGATCAGTCGCTGCTGGTCTGGTGGGATTCCTTCCTTGTCCTGGATCTTA 2688 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 ||| || |||| | | |||||||| ||| || ||||| || ||||| || || ||| Sbjct 2687 GCTTTAACGTTCTCAATGGTGTCTGAAGCCTCAACCTCAAGTGTGATAGTCTTCCCGGTG 2628 Query 152082 AGAGTCTTCACGAAGACCTGCAT 152104 |||||||| ||||||| ||||| Sbjct 2627 AGAGTCTTGACGAAGATTTGCAT 2605 Score = 102 bits (112), Expect = 2e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 151965 CCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGT 152024 || |||||||| || || ||||| || | | |||||| ||||| ||||||||||| | Sbjct 2447 CCTGCGAAGATCAGTCTTTGCTGATCGGGTGGGATTCCCTCCTTGTCTTGAATTTTAGCT 2388 Query 152025 TTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGA 152084 || ||| |||| | | | || ||| || || || || |||||||||||||| || || Sbjct 2387 TTCACATTCTCAATGGTATCAGAAGCTTCCACCTCGAGGGTAATAGTTTTGCCTGTTAGC 2328 Query 152085 GTCTTCACGAAGACCTGCATT 152105 ||||| ||||| | ||||||| Sbjct 2327 GTCTTTACGAAAATCTGCATT 2307 Score = 102 bits (112), Expect = 2e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 151965 CCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGT 152024 || |||||||| | || ||||| || | | |||||||||||| || ||||| || | Sbjct 3932 CCAGCGAAGATCAATCTTTGCTGATCAGGTGGGATTCCTTCCTTGTCCTGAATCTTGGCT 3873 Query 152025 TTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGA 152084 |||||| |||| | |||| ||| || |||||||| || || ||||| || ||||| Sbjct 3872 TTGACATTCTCAATCGTGTCCGAAGCTTCGACTTCAAGGGTGATGGTTTTCCCAGTGAGG 3813 Query 152085 GTCTTCACGAAGACCTGCATT 152105 || |||||||||| ||||||| Sbjct 3812 GTTTTCACGAAGATCTGCATT 3792 Score = 96.9 bits (106), Expect = 8e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 151965 CCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGT 152024 ||||| ||||| | || ||||| || | | |||||||||||| ||||| || || | Sbjct 4231 CCGGCAAAGATCAACCGTTGCTGATCTGGTGGGATTCCTTCCTTGTCTTGGATCTTGGCT 4172 Query 152025 TTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGA 152084 |||||| |||| | |||| ||| || || ||||| || || ||||| || ||||| Sbjct 4171 TTGACATTCTCAATCGTGTCCGAAGCTTCGACCTCAAGGGTGATGGTTTTCCCAGTGAGG 4112 Query 152085 GTCTTCACGAAGACCTGCATT 152105 || |||||||||| ||||||| Sbjct 4111 GTTTTCACGAAGATCTGCATT 4091 Score = 86.0 bits (94), Expect = 1e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 151965 CCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGT 152024 ||||||||||| | || |||||| || | | || |||||||| || || || || | Sbjct 3340 CCGGCGAAGATCAACCGCTGCTGATCTGGTGGAATACCTTCCTTGTCCTGGATCTTAGCT 3281 Query 152025 TTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGA 152084 || ||| | || | |||| || ||| |||||||| || || || || || ||||| Sbjct 3280 TTCACATTTTCGATCGTGTCGGAGGCCTCAACTTCAAGCGTGATGGTCTTTCCTGTGAGG 3221 Query 152085 GTCTTCACGAAGACCTGCAT 152104 ||||||||||||| |||||| Sbjct 3220 GTCTTCACGAAGATCTGCAT 3201 >seq28266 Length=552 Score = 102 bits (112), Expect = 2e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 151965 CCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGT 152024 || |||||||| | || ||||| || | | |||||||||||| || ||||| || | Sbjct 324 CCAGCGAAGATCAATCTTTGCTGATCAGGTGGGATTCCTTCCTTGTCCTGAATCTTGGCT 265 Query 152025 TTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGA 152084 |||||| |||| | |||| ||| || |||||||| || || ||||| || ||||| Sbjct 264 TTGACATTCTCAATCGTGTCCGAAGCTTCGACTTCAAGGGTGATGGTTTTCCCAGTGAGG 205 Query 152085 GTCTTCACGAAGACCTGCATT 152105 || |||||||||| ||||||| Sbjct 204 GTTTTCACGAAGATCTGCATT 184 >seq2779 Length=25375 Score = 93.3 bits (102), Expect = 1e-13 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 151965 CCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGT 152024 ||||||||||| | | |||||| || | | ||| || ||||| || || || || Sbjct 20765 CCGGCGAAGATCAATCGCTGCTGATCTGGAGGGATACCCTCCTTATCCTGGATCTTGGCC 20824 Query 152025 TTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGA 152084 |||||| |||| | |||| || ||| || || || || || ||||||||||||||| Sbjct 20825 TTGACATTCTCGATCGTGTCGGAGGCCTCCACCTCGAGGGTGATGGTTTTGCCCGTGAGA 20884 Query 152085 GTCTTCACGAAGACCTGCATT 152105 ||||||||||||| |||||| Sbjct 20885 GTCTTCACGAAGATTTGCATT 20905 >seq17 Length=262609 Score = 84.2 bits (92), Expect = 5e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 151965 CCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGT 152024 || ||||||||||||| |||||| || | || || || ||||| || ||||| ||| | Sbjct 67095 CCTGCGAAGATAAGCCGCTGCTGATCTGGCGGAATACCCTCCTTGTCCTGAATCTTTGCT 67036 Query 152025 TTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGA 152084 || || |||| | |||| || || |||||||| || || || || ||||| ||| Sbjct 67035 TTCACGTTCTCAATAGTGTCCGATGCTTCGACTTCAAGCGTGATGGTCTTTCCCGTTAGA 66976 Query 152085 GTCTTCACGAAGACCTGCATT 152105 ||||| || || | |||||| Sbjct 66975 GTCTTGACAAAAATTTGCATT 66955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153386539710625