Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nippostrongylus_20brasiliensis_20[genbank_20GCA_5F000951335.1_202014 -09-26] 29,375 sequences; 294,400,206 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq7726 114 9e-21 seq2779 109 4e-19 seq20723 95.1 9e-15 seq17 95.1 9e-15 >seq7726 Length=8395 Score = 114 bits (126), Expect = 9e-21 Identities = 110/141 (78%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 44198 CCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGC 44257 ||||| |||||||| ||||||||||||| || | ||||||||| ||| ||||| Sbjct 3340 CCGGCGAAGATCAACCGCTGCTGATCTGGTGGAATACCTTCCTTGTCCTGGATCTTAGCT 3281 Query 44258 TTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGG 44317 |||| || | || ||||||| || || || || | ||| || |||||||| |||||| Sbjct 3280 TTCACATTTTCGATCGTGTCGGAGGCCTCAACTTCAAGCGTGATGGTCTTTCCTGTGAGG 3221 Query 44318 GTCTTCACGAAGATTTGCATG 44338 |||||||||||||| |||||| Sbjct 3220 GTCTTCACGAAGATCTGCATG 3200 Score = 96.9 bits (106), Expect = 2e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 44198 CCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGC 44257 || ||||||||||| ||||||||||||| || | |||||||| ||| ||||| | Sbjct 4527 CCAGCAAAGATCAATCGCTGCTGATCTGGTGGGATTCCTTCCTTGTCCTGGATCTTTGCC 4468 Query 44258 TTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGG 44317 || | || | || || |||| || || ||||| | || ||||||||||| |||||| Sbjct 4467 TTAACATTTTCGATCGTATCGGAGGCCTCAACCTCGAGGGTGATCGTCTTTCCTGTGAGG 4408 Query 44318 GTCTTCACGAAGATTTGCATG 44338 || || ||||| || |||||| Sbjct 4407 GTTTTGACGAAAATCTGCATG 4387 Score = 95.1 bits (104), Expect = 9e-15 Identities = 110/146 (75%), Gaps = 2/146 (1%) Strand=Plus/Minus Query 44194 CTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTT 44253 ||| || || ||||||| |||||||| |||| || | |||||||| ||| ||||| Sbjct 2748 CTTACCTGCGAAGATCAGTCGCTGCTGGTCTGGTGGGATTCCTTCCTTGTCCTGGATCTT 2689 Query 44254 CTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCG 44312 |||| || |||| | |||||||| | | || ||||| | || || ||||| || | Sbjct 2688 A-GCTTTAACGTTCTCAATGGTGTCTGAAGCCTCAACCTCAAGTGTGATAGTCTTCCCGG 2630 Query 44313 TGAGGGTCTTCACGAAGATTTGCATG 44338 |||| ||||| ||||||||||||||| Sbjct 2629 TGAGAGTCTTGACGAAGATTTGCATG 2604 Score = 95.1 bits (104), Expect = 9e-15 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 44194 CTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTT 44253 ||| || ||||||||||| || |||||||||| || | |||||||| ||| ||||| Sbjct 4829 CTTACCAGCAAAGATCAATCGTTGCTGATCTGGTGGGATTCCTTCCTTGTCCTGAATCTT 4770 Query 44254 CTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGT 44313 | || | || | || ||||||| | ||| || || | || || |||||||| || Sbjct 4769 CGCTTTGACATTTTCGATTGTGTCGGAAGCTTCAACTTCGAGGGTGATGGTCTTTCCGGT 4710 Query 44314 GAGGGTCTTCACGAAGATTTGCATG 44338 ||| ||||||||||| || |||||| Sbjct 4709 GAGCGTCTTCACGAATATCTGCATG 4685 Score = 93.3 bits (102), Expect = 3e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 44198 CCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGC 44257 ||||| |||||||| ||||||||||||| || | |||||||| ||| ||||| | Sbjct 3043 CCGGCGAAGATCAATCGCTGCTGATCTGGTGGAATTCCTTCCTTGTCCTGGATCTTTGCC 2984 Query 44258 TTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGG 44317 || | || | |||||||| | | ||| || || | || || || ||||| |||||| Sbjct 2983 TTAACATTTTCGATGGTGTCCGACGCTTCAACTTCGAGAGTGATGGTTTTTCCGGTGAGG 2924 Query 44318 GTCTTCACGAAGATTTGCATG 44338 ||||| || ||||| |||||| Sbjct 2923 GTCTTGACAAAGATCTGCATG 2903 Score = 86.0 bits (94), Expect = 5e-12 Identities = 105/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 44198 CCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGC 44257 |||||||||||||| || |||||||||| || | |||||||| || ||||| || Sbjct 4231 CCGGCAAAGATCAACCGTTGCTGATCTGGTGGGATTCCTTCCTTGTCTTGGATCTTG-GC 4173 Query 44258 TTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAG 44316 || | ||| | || ||||| | | ||| ||||| | || || || || || ||||| Sbjct 4172 TTTGACATTCTCAATCGTGTCCGAAGCTTCGACCTCAAGGGTGATGGTTTTCCCAGTGAG 4113 Query 44317 GGTCTTCACGAAGATTTGCAT 44337 ||| ||||||||||| ||||| Sbjct 4112 GGTTTTCACGAAGATCTGCAT 4092 >seq2779 Length=25375 Score = 109 bits (120), Expect = 4e-19 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 44198 CCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGC 44257 ||||| |||||||| ||||||||||||| ||| | ||| ||||| ||| ||||| | Sbjct 20765 CCGGCGAAGATCAATCGCTGCTGATCTGGAGGGATACCCTCCTTATCCTGGATCTTGGCC 20824 Query 44258 TTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGG 44317 || | | | || ||||||| || |||||||| | || || || || |||||||| Sbjct 20825 TTGACATTCTCGATCGTGTCGGAGGCCTCCACCTCGAGGGTGATGGTTTTGCCCGTGAGA 20884 Query 44318 GTCTTCACGAAGATTTGCAT 44337 |||||||||||||||||||| Sbjct 20885 GTCTTCACGAAGATTTGCAT 20904 >seq20723 Length=1367 Score = 95.1 bits (104), Expect = 9e-15 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 44194 CTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTT 44253 ||| || ||||||||||| || |||||||||| || | |||||||| ||| ||||| Sbjct 466 CTTACCAGCAAAGATCAATCGTTGCTGATCTGGTGGGATTCCTTCCTTGTCCTGAATCTT 407 Query 44254 CTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGT 44313 | || | || | || ||||||| | ||| || || | || || |||||||| || Sbjct 406 CGCTTTGACATTTTCGATTGTGTCGGAAGCTTCAACTTCGAGGGTGATGGTCTTTCCGGT 347 Query 44314 GAGGGTCTTCACGAAGATTTGCATG 44338 ||| ||||||||||| || |||||| Sbjct 346 GAGCGTCTTCACGAATATCTGCATG 322 Score = 87.8 bits (96), Expect = 1e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 44198 CCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGC 44257 ||||| |||||||| ||||||||||||| || | || ||||| ||| ||||| | Sbjct 166 CCGGCGAAGATCAATCGCTGCTGATCTGGTGGGATTCCCTCCTTGTCCTGGATCTTGGCC 107 Query 44258 TTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGG 44317 || | || | || || |||| || || ||||| | || || |||||||| |||||| Sbjct 106 TTGACATTTTCGATTGTATCGGAGGCCTCAACCTCGAGGGTGATTGTCTTTCCTGTGAGG 47 Query 44318 GTCTTCACGAAGATTTGCATG 44338 || || ||||| || |||||| Sbjct 46 GTTTTGACGAAAATCTGCATG 26 >seq17 Length=262609 Score = 95.1 bits (104), Expect = 9e-15 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 44198 CCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGC 44257 || |||||||| | |||||||||||||| || | |||||||| || ||||| | Sbjct 68747 CCAGCAAAGATGAGACGCTGCTGATCTGGGGGAATCCCTTCCTTGTCTTGGATCTTGGCC 68688 Query 44258 TTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGG 44317 || | || | | |||||| | | |||||||| | ||| ||||||||||| || ||| Sbjct 68687 TTGACATTTTCGACGGTGTCCGAAGCCTCCACCTCAAGCGTGATCGTCTTTCCGGTCAGG 68628 Query 44318 GTCTTCACGAAGATTTGCAT 44337 |||||||| ||||| ||||| Sbjct 68627 GTCTTCACAAAGATCTGCAT 68608 Score = 87.8 bits (96), Expect = 1e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 44192 TGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATC 44251 |||| || |||||||| | ||||||||||| | || | ||||||||| || ||| Sbjct 66167 TGCTAACCTGCAAAGATGAGTCGCTGCTGATCCGGTGGAATACCTTCCTTGTCTTGGATC 66108 Query 44252 TTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCC 44311 || ||| | || | || ||||| | || ||| ||||| | ||| || |||||||| Sbjct 66107 TTAGCCTTTACATTTTCAATCGTGTCAGAGGCTTCAACCTCAAGCGTGATAGTCTTTCCA 66048 Query 44312 GTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||| ||||| || |||||||| Sbjct 66047 GTAAGGGTTTTCACAAAAATTTGCAT 66022 Score = 86.0 bits (94), Expect = 5e-12 Identities = 105/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 44198 CCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGC 44257 || || ||||| | ||||||||||||| || | ||| ||||| ||| ||||| ||| Sbjct 67095 CCTGCGAAGATAAGCCGCTGCTGATCTGGCGGAATACCCTCCTTGTCCTGAATCTT-TGC 67037 Query 44258 TTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAG 44316 || | |||| | || ||||| | | ||| || || | ||| || ||||||||||| || Sbjct 67036 TTTCACGTTCTCAATAGTGTCCGATGCTTCGACTTCAAGCGTGATGGTCTTTCCCGTTAG 66977 Query 44317 GGTCTTCACGAAGATTTGCAT 44337 ||||| || || |||||||| Sbjct 66976 AGTCTTGACAAAAATTTGCAT 66956 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359861520624375