Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nippostrongylus_20brasiliensis_20[genbank_20GCA_5F000951335.1_202014 -09-26] 29,375 sequences; 294,400,206 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq2779 134 3e-26 seq7726 131 4e-25 seq20723 127 5e-24 seq28266 125 2e-23 seq17 125 2e-23 >seq2779 Length=25375 Score = 134 bits (148), Expect = 3e-26 Identities = 112/137 (82%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| |||||||| |||||||| || ||||| ||||||||||||||||| ||| ||| Sbjct 20901 CAAATCTTCGTGAAGACTCTCACGGGCAAAACCATCACCCTCGAGGTGGAGGCCTCCGAC 20842 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||| ||||| ||||| ||||| || || || |||||||| || ||||| Sbjct 20841 ACGATCGAGAATGTCAAGGCCAAGATCCAGGATAAGGAGGGTATCCCTCCAGATCAGCAG 20782 Query 178044 CGACTTATCTTCGCCGG 178060 ||| | ||||||||||| Sbjct 20781 CGATTGATCTTCGCCGG 20765 >seq7726 Length=8395 Score = 131 bits (144), Expect = 4e-25 Identities = 113/140 (81%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || |||||||| || || || ||||| || ||||| || |||||| Sbjct 2608 CAAATCTTCGTCAAGACTCTCACCGGGAAGACTATCACACTTGAGGTTGAGGCTTCAGAC 2667 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| |||||||| ||| ||||| |||||||| ||||||||||| || |||||||| Sbjct 2668 ACCATTGAGAACGTTAAAGCTAAGATCCAGGACAAGGAAGGAATCCCACCAGACCAGCAG 2727 Query 178044 CGACTTATCTTCGCCGGAAA 178063 ||||| |||||||| || || Sbjct 2728 CGACTGATCTTCGCAGGTAA 2747 Score = 127 bits (140), Expect = 5e-24 Identities = 112/140 (80%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || ||||| ||||| || ||||||||||| || ||| || ||| Sbjct 4689 CAGATATTCGTGAAGACGCTCACCGGAAAGACCATCACCCTCGAAGTTGAAGCTTCCGAC 4748 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || |||||| |||||||||||||| ||||||||||| || || |||||| Sbjct 4749 ACAATCGAAAATGTCAAAGCGAAGATTCAGGACAAGGAAGGAATCCCACCAGATCAGCAA 4808 Query 178044 CGACTTATCTTCGCCGGAAA 178063 ||| | ||||| || || || Sbjct 4809 CGATTGATCTTTGCTGGTAA 4828 Score = 125 bits (138), Expect = 2e-23 Identities = 110/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||||||||| ||||| || ||||| |||||||| || || ||| || ||| Sbjct 3796 CAGATCTTCGTGAAAACCCTCACTGGGAAAACCATCACCCTTGAAGTCGAAGCTTCGGAC 3855 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| |||||| |||||||||||||| ||||||||||| || || |||||| Sbjct 3856 ACGATTGAGAATGTCAAAGCCAAGATTCAGGACAAGGAAGGAATCCCACCTGATCAGCAA 3915 Query 178044 CGACTTATCTTCGCCGG 178060 || | |||||||| || Sbjct 3916 AGATTGATCTTCGCTGG 3932 Score = 125 bits (138), Expect = 2e-23 Identities = 110/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| ||||| ||||||||||| ||||||||||||||||| || ||| || Sbjct 4391 CAGATTTTCGTCAAAACCCTCACAGGAAAGACGATCACCCTCGAGGTTGAGGCCTCCGAT 4450 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || || || |||||| |||||||| ||||||||||| || || ||||| Sbjct 4451 ACGATCGAAAATGTTAAGGCAAAGATCCAGGACAAGGAAGGAATCCCACCAGATCAGCAG 4510 Query 178044 CGACTTATCTTCGCCGG 178060 ||| | ||||| || || Sbjct 4511 CGATTGATCTTTGCTGG 4527 Score = 122 bits (134), Expect = 2e-22 Identities = 109/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||||||||| ||||| || ||||| |||||||| ||||| ||| || ||| Sbjct 4095 CAGATCTTCGTGAAAACCCTCACTGGGAAAACCATCACCCTTGAGGTCGAAGCTTCGGAC 4154 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| |||||| ||||| || ||||| ||||||||||| || || |||||| Sbjct 4155 ACGATTGAGAATGTCAAAGCCAAGATCCAAGACAAGGAAGGAATCCCACCAGATCAGCAA 4214 Query 178044 CGACTTATCTTCGCCGG 178060 || | ||||| ||||| Sbjct 4215 CGGTTGATCTTTGCCGG 4231 Score = 116 bits (128), Expect = 9e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || || ||||| ||||| || ||||||||||||||| || || Sbjct 2311 CAGATTTTCGTAAAGACGCTAACAGGCAAAACTATTACCCTCGAGGTGGAAGCTTCTGAT 2370 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| || ||| || ||||| ||||| || |||||||| || || |||||| Sbjct 2371 ACCATTGAGAATGTGAAAGCTAAAATTCAAGACAAGGAGGGAATCCCACCCGATCAGCAA 2430 Query 178044 CGACTTATCTTCGCCGG 178060 |||| |||||||| || Sbjct 2431 AGACTGATCTTCGCAGG 2447 Score = 113 bits (124), Expect = 1e-19 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || ||||| |||||||| ||||| ||||| || ||| || ||| Sbjct 2907 CAGATCTTTGTCAAGACCCTCACCGGAAAAACCATCACTCTCGAAGTTGAAGCGTCGGAC 2966 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || || || |||||| |||||||| |||||||| || || || ||||| Sbjct 2967 ACCATCGAAAATGTTAAGGCAAAGATCCAGGACAAGGAAGGAATTCCACCAGATCAGCAG 3026 Query 178044 CGACTTATCTTCGCCGG 178060 ||| | ||||||||||| Sbjct 3027 CGATTGATCTTCGCCGG 3043 Score = 104 bits (114), Expect = 6e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || ||||||||||| || ||||| || || || || ||| ||| Sbjct 3204 CAGATCTTCGTGAAGACCCTCACAGGAAAGACCATCACGCTTGAAGTTGAGGCCTCCGAC 3263 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || || ||| ||||| |||||||| ||||| || || || || ||||| Sbjct 3264 ACGATCGAAAATGTGAAAGCTAAGATCCAGGACAAGGAAGGTATTCCACCAGATCAGCAG 3323 Query 178044 CGACTTATCTTCGCCGG 178060 || | ||||||||||| Sbjct 3324 CGGTTGATCTTCGCCGG 3340 >seq20723 Length=1367 Score = 127 bits (140), Expect = 5e-24 Identities = 112/140 (80%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || ||||| ||||| || ||||||||||| || ||| || ||| Sbjct 326 CAGATATTCGTGAAGACGCTCACCGGAAAGACCATCACCCTCGAAGTTGAAGCTTCCGAC 385 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || |||||| |||||||||||||| ||||||||||| || || |||||| Sbjct 386 ACAATCGAAAATGTCAAAGCGAAGATTCAGGACAAGGAAGGAATCCCACCAGATCAGCAA 445 Query 178044 CGACTTATCTTCGCCGGAAA 178063 ||| | ||||| || || || Sbjct 446 CGATTGATCTTTGCTGGTAA 465 Score = 125 bits (138), Expect = 2e-23 Identities = 110/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| ||||| ||||||||||| || |||||||||||||| || ||| || Sbjct 30 CAGATTTTCGTCAAAACCCTCACAGGAAAGACAATCACCCTCGAGGTTGAGGCCTCCGAT 89 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || ||||| ||||| |||||||| || |||||||| || || ||||| Sbjct 90 ACAATCGAAAATGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCACCAGATCAGCAG 149 Query 178044 CGACTTATCTTCGCCGG 178060 ||| | ||||||||||| Sbjct 150 CGATTGATCTTCGCCGG 166 >seq28266 Length=552 Score = 125 bits (138), Expect = 2e-23 Identities = 110/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||||||||| ||||| || ||||| |||||||| || || ||| || ||| Sbjct 188 CAGATCTTCGTGAAAACCCTCACTGGGAAAACCATCACCCTTGAAGTCGAAGCTTCGGAC 247 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| |||||| |||||||||||||| ||||||||||| || || |||||| Sbjct 248 ACGATTGAGAATGTCAAAGCCAAGATTCAGGACAAGGAAGGAATCCCACCTGATCAGCAA 307 Query 178044 CGACTTATCTTCGCCGG 178060 || | |||||||| || Sbjct 308 AGATTGATCTTCGCTGG 324 >seq17 Length=262609 Score = 125 bits (138), Expect = 2e-23 Identities = 110/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||||||||||||||| || ||||||||||| ||||| || ||| ||| ||| Sbjct 66323 CAGATTTTCGTGAAAACTCTCACCGGGAAAACGATCACACTCGAAGTTGAAGCCTCCGAC 66382 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| ||||| || ||||| || ||||| |||||||| || || || ||||| Sbjct 66383 ACAATCGAAAACGTAAAGTCTAAGATCCAAGACAAGGAAGGAATTCCACCAGATCAGCAG 66442 Query 178044 CGACTTATCTTCGCCGG 178060 |||| ||||| ||||| Sbjct 66443 AGACTCATCTTTGCCGG 66459 Score = 113 bits (124), Expect = 1e-19 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || || ||||| || ||||| || ||||| || || || ||| || ||| Sbjct 66959 CAAATTTTTGTCAAGACTCTAACGGGAAAGACCATCACGCTTGAAGTCGAAGCATCGGAC 67018 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || |||||||| ||| ||||||||||||||| || || || || || || ||||| Sbjct 67019 ACTATTGAGAACGTGAAAGCAAAGATTCAGGACAAGGAGGGTATTCCGCCAGATCAGCAG 67078 Query 178044 CGACTTATCTTCGCCGG 178060 || ||||||||||| || Sbjct 67079 CGGCTTATCTTCGCAGG 67095 Score = 95.1 bits (104), Expect = 3e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| |||||||| || ||||| || || || || || || ||| || || Sbjct 66606 CAAATTTTCGTCAAAACTCTTACCGGAAAGACTATTACGCTGGAAGTAGAAGCTTCTGAT 66665 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || ||||| ||||| || |||||||| ||||| ||||| || Sbjct 66666 ACTATTGAAAATGTGAAGGCGAAGATCCAGGATAAGGAAGGAATTCCTCCAGACCAACAG 66725 Query 178044 CGACTTATCTTCGCCGG 178060 ||||| ||||| || || Sbjct 66726 CGACTCATCTTTGCTGG 66742 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203278155073750