Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oesophagostomum_20dentatum_20[genbank_20GCA_5F000797555.1_202014-12- 15] 64,255 sequences; 443,017,110 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq61737 86.0 5e-12 seq24355 82.4 7e-11 >seq61737 Length=3671 Score = 86.0 bits (94), Expect = 5e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 118599 CCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGT 118658 || ||| | ||||| | |||||||||||| || ||||| |||||||| ||| || | Sbjct 2967 CCGGCGAAAATGAGCCTCTGCTGATCGGGTGGAATGCCTTCCTTGTCCTGAATCTTCGCT 3026 Query 118659 TTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGA 118718 || || | || | |||||||| |||||| || | ||| | ||||| || |||| Sbjct 3027 TTCACATTCTCAATGGTGTCCGACGCCTCGACTTCAAGGGTGATGGTTTTTCCCGTCAAG 3086 Query 118719 GTTTTTACAAAAATCTGCAT 118738 || || |||||||||||||| Sbjct 3087 GTCTTCACAAAAATCTGCAT 3106 >seq24355 Length=1900 Score = 82.4 bits (90), Expect = 7e-11 Identities = 100/134 (75%), Gaps = 2/134 (1%) Strand=Plus/Plus Query 118606 AGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCT 118665 |||| || ||||||||||| || || || ||||| ||||| ||||| || || | Sbjct 1725 AGATAAGGCGCTGCTGATCTGGTGGGATTCCCTCTTTGTCCTGGATTTTGGCCTTCACAT 1784 Query 118666 GTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTT 118724 ||||| ||||| | ||| |||||| || | ||| | ||| || || ||||| ||||| Sbjct 1785 TTTCGATTGTGTCTGATGC-CTCGACTTCCAGGGTGATCGTCTTTCCTGTCAGCGTTTTC 1843 Query 118725 ACAAAAATCTGCAT 118738 || ||||||||||| Sbjct 1844 ACGAAAATCTGCAT 1857 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433490664024460