Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oesophagostomum_20dentatum_20[genbank_20GCA_5F000797555.1_202014-12- 15] 64,255 sequences; 443,017,110 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq51084 95.1 1e-14 seq2576 95.1 1e-14 seq2773 93.3 5e-14 seq60465 87.8 2e-12 seq59110 87.8 2e-12 seq53478 87.8 2e-12 seq52363 87.8 2e-12 seq1547 87.8 2e-12 seq10096 86.0 7e-12 seq2851 86.0 7e-12 seq45072 82.4 9e-11 seq10935 82.4 9e-11 >seq51084 Length=8423 Score = 95.1 bits (104), Expect = 1e-14 Identities = 72/85 (85%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 60054 ATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 |||||||| |||||| |||| |||||| |||||| |||||| | ||||||| || | Sbjct 7507 ATGAAAAACATTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGA 7566 Query 60114 TACTCACCACTATACTACCGAGGAT 60138 ||||||||||||||||||||||||| Sbjct 7567 TACTCACCACTATACTACCGAGGAT 7591 >seq2576 Length=39266 Score = 95.1 bits (104), Expect = 1e-14 Identities = 72/84 (86%), Gaps = 1/84 (1%) Strand=Plus/Plus Query 60054 ATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 ||| |||| || |||| |||| |||||| |||||| |||||| | ||||||||||| | Sbjct 24827 ATGCAAAACTT-CTCCCCGGCCGGGAATTGAACCCGGGTCTCGCACGTGACAGGCGCGGA 24885 Query 60114 TACTCACCACTATACTACCGAGGA 60137 |||||||||||||||||||||||| Sbjct 24886 TACTCACCACTATACTACCGAGGA 24909 >seq2773 Length=23106 Score = 93.3 bits (102), Expect = 5e-14 Identities = 69/81 (85%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 |||| |||||| |||| |||||| |||||| |||||| | ||||||| || | ||||| Sbjct 15716 AAAAGATTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCAGATACT 15657 Query 60118 CACCACTATACTACCGAGGAT 60138 ||||||||||||||||||||| Sbjct 15656 CACCACTATACTACCGAGGAT 15636 >seq60465 Length=1902 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/85 (84%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 60054 ATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 ||| |||| || |||| |||| |||||| |||||| |||||| | ||||||| || | Sbjct 732 ATGCAAAACTT-CTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGA 790 Query 60114 TACTCACCACTATACTACCGAGGAT 60138 ||||||||||||||||||||||||| Sbjct 791 TACTCACCACTATACTACCGAGGAT 815 >seq59110 Length=2121 Score = 87.8 bits (96), Expect = 2e-12 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 |||| |||||| |||| |||||| |||||| |||||| | ||||||| || ||||| Sbjct 2121 AAAAGATTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATACT 2062 Query 60118 CACCACTATACTACCGAGGAT 60138 ||||||||||||||||||||| Sbjct 2061 CACCACTATACTACCGAGGAT 2041 >seq53478 Length=3409 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/85 (84%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 60054 ATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 ||| |||| || |||| |||| |||||| |||||| |||||| | ||||||| || | Sbjct 1752 ATGCAAAAGTT-CTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGA 1810 Query 60114 TACTCACCACTATACTACCGAGGAT 60138 ||||||||||||||||||||||||| Sbjct 1811 TACTCACCACTATACTACCGAGGAT 1835 >seq52363 Length=4233 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/85 (84%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 60054 ATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 ||| |||| || |||| |||| |||||| |||||| |||||| | ||||||| || | Sbjct 2964 ATGCAAAACTT-CTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGA 3022 Query 60114 TACTCACCACTATACTACCGAGGAT 60138 ||||||||||||||||||||||||| Sbjct 3023 TACTCACCACTATACTACCGAGGAT 3047 >seq1547 Length=50753 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/85 (84%), Gaps = 1/85 (1%) Strand=Plus/Minus Query 60054 ATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 ||| |||| || |||| |||| |||||| |||||| |||||| | ||||||| || | Sbjct 1071 ATGCAAAACTT-CTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGA 1013 Query 60114 TACTCACCACTATACTACCGAGGAT 60138 ||||||||||||||||||||||||| Sbjct 1012 TACTCACCACTATACTACCGAGGAT 988 >seq10096 Length=16071 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| |||| |||||| |||||| |||||| | ||||||| || ||||||||||| Sbjct 1266 TTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATACTCACCAC 1325 Query 60124 TATACTACCGAGGAT 60138 ||||||||||||||| Sbjct 1326 TATACTACCGAGGAT 1340 >seq2851 Length=25168 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| |||| |||||| |||||| |||||| | ||||||| || ||||||||||| Sbjct 4459 TTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATACTCACCAC 4518 Query 60124 TATACTACCGAGGAT 60138 ||||||||||||||| Sbjct 4519 TATACTACCGAGGAT 4533 >seq45072 Length=1073 Score = 82.4 bits (90), Expect = 9e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 60054 ATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 ||| |||| |||||| |||| |||||| |||||| || ||| | ||||||| || | Sbjct 943 ATGCAAAAGATTCTCCCCGGCCGGGAATTGAACCCGGGCCTCGCATGTGACAGACGCGGA 1002 Query 60114 TACTCACCACTATACTACCGAGGAT 60138 | ||||||||||||||||||||||| Sbjct 1003 TGCTCACCACTATACTACCGAGGAT 1027 >seq10935 Length=5215 Score = 82.4 bits (90), Expect = 9e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 ||||| |||| |||||| |||||| |||||| | ||||||| || ||||||||||| Sbjct 4338 TTCTCGCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATACTCACCAC 4397 Query 60124 TATACTACCGAGGAT 60138 ||||||||||||||| Sbjct 4398 TATACTACCGAGGAT 4412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571358323251400