Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oesophagostomum_20dentatum_20[genbank_20GCA_5F000797555.1_202014-12- 15] 64,255 sequences; 443,017,110 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq61737 102 2e-16 seq24355 96.9 8e-15 >seq61737 Length=3671 Score = 102 bits (112), Expect = 2e-16 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || || ||||| || ||||| || ||||| || || || ||||| || || ||||| || Sbjct 3278 TTACCGGCAAAGATGAGCCTTTGCTGATCTGGTGGGATGCCTTCCTTGTCTTGAATTTTG 3337 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 ||||| ||||| || | ||||| || || || || || ||||| ||||| |||||| Sbjct 3338 GCTTTCACATTCTCAATAGTATCTGAAGCCTCGACTTCCAGGGTAATGGTCTTTCCAGTA 3397 Query 104537 AGTGTTTTTACAAATATCTGCATT 104560 |||||||| || || || |||||| Sbjct 3398 AGTGTTTTCACGAAAATTTGCATT 3421 Score = 87.8 bits (96), Expect = 4e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 || || ||||| |||||||| ||||| || || || ||||| || ||||||||||| ||| Sbjct 2967 CCGGCGAAAATGAGCCTCTGCTGATCGGGTGGAATGCCTTCCTTGTCCTGAATCTTCGCT 3026 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || ||||| || | ||| || | || || || || || || || || || || | Sbjct 3027 TTCACATTCTCAATGGTGTCCGACGCCTCGACTTCAAGGGTGATGGTTTTTCCCGTCAAG 3086 Query 104540 GTTTTTACAAATATCTGCATT 104560 || || ||||| ||||||||| Sbjct 3087 GTCTTCACAAAAATCTGCATT 3107 >seq24355 Length=1900 Score = 96.9 bits (106), Expect = 8e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 ||||||||||| || | || ||||| || || || || || |||||||||||||| || Sbjct 122 CCAGCAAAAATAAGACGTTGCTGATCCGGTGGGATGCCCTCCTTATCCTGAATCTTCGCC 181 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || ||||| || | |||||| || ||| || || || || || ||||| || || || Sbjct 182 TTCACATTCTCGATAGTATCGGAAGCTTCGACTTCGAGGGTGATCGTCTTTCCGGTCAGG 241 Query 104540 GTTTTTACAAATATCTGCATT 104560 || || || || ||||||||| Sbjct 242 GTCTTCACGAAGATCTGCATT 262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150450491477540