Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oesophagostomum_20dentatum_20[genbank_20GCA_5F000797555.1_202014-12- 15] 64,255 sequences; 443,017,110 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq55675 208 1e-49 seq14249 203 5e-48 seq55109 176 7e-40 seq2815 163 4e-36 seq12453 100 4e-17 seq24816 80.6 4e-11 >seq55675 Length=2688 Score = 208 bits (230), Expect = 1e-49 Identities = 208/270 (77%), Gaps = 0/270 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 ||||| || ||||| | | ||||| || ||||||||||| ||||| ||||| ||||| Sbjct 1145 GCTAAACGCCATCGTAAAGTACTTCGTGACAACATCCAAGGCATCACTAAGCCTGCTATT 1086 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||||||||||||||| ||||| |||||| | ||||| || |||| || || | Sbjct 1085 CGTCGTCTGGCTCGTCGTGGAGGAGTGAAGCGTATTTCTGGTCTGATCTACGAGGAAACC 1026 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| |||||| | |||||| | | |||||| | ||| ||| || |||| || Sbjct 1025 CGTGGTGTATTGAAGGTGTTCCTCGAAAACGTTATTCGTGACGCTGTCACCTATTGTGAA 966 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| ||||| |||||||| || | ||||| |||||||||| |||| |||||||| Sbjct 965 CACGCCAAACGCAAGACTGTAACTGCAATGGACGTCGTCTATGCCCTGAAGCGTCAAGGT 906 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAATCT 16702 |||| | ||||| |||||| | ||| || Sbjct 905 CGTACCCTCTATGGATTTGGAGGATAAACT 876 >seq14249 Length=3826 Score = 203 bits (224), Expect = 5e-48 Identities = 207/270 (77%), Gaps = 0/270 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 ||||| || ||||| | | ||||| || ||||||||||| ||||| ||||| ||||| Sbjct 2892 GCTAAACGCCATCGTAAAGTGCTTCGTGACAACATCCAAGGCATCACTAAGCCTGCTATT 2833 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||||||||| |||||||| ||||| |||||| | ||||| || |||| || || | Sbjct 2832 CGTCGTCTGGCCCGTCGTGGAGGAGTGAAGCGTATTTCTGGTCTGATCTACGAGGAAACC 2773 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| |||||| | |||||| | | |||||| | ||| ||| || |||| || Sbjct 2772 CGTGGTGTATTGAAGGTGTTCCTCGAAAACGTTATTCGTGACGCTGTCACCTATTGTGAA 2713 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| ||||| |||||||| || | ||||| |||||||||| |||| |||||||| Sbjct 2712 CACGCCAAACGCAAGACTGTAACTGCAATGGACGTCGTCTATGCCCTGAAGCGTCAAGGT 2653 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAATCT 16702 |||| | ||||| |||||| | ||| || Sbjct 2652 CGTACTCTCTATGGATTTGGAGGATAAACT 2623 >seq55109 Length=2833 Score = 176 bits (194), Expect = 7e-40 Identities = 195/260 (75%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||||| | |||||| || |||||||| ||||||||||| || ||||| Sbjct 2627 GCGAAGCGCCATCGCAAAGTTCTTCGTGACAACATCCAGGGAATCACCAAACCTGCTATT 2568 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||| || |||||||||||||| ||||| |||| ||| | |||| || |||| Sbjct 2567 CGCCGTCTTGCACGTCGTGGTGGAGTGAAGCGCATCTCCGGACTCATCTACGAGGAGACG 2508 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 | | || ||||| | ||||| ||| ||| ||| || ||| || ||| |||| Sbjct 2507 AGAGGAGTGCTGAAGGTATTCCTGGAGAACGTGATCAGGGACGCTGTCACCTACTGCGAG 2448 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || || ||||| |||||| |||||||| ||||||| || | || || |||||| Sbjct 2447 CACGCCAAGCGCAAGACCGTCACCGCCATGGATGTCGTCTACGCCCTCAAGCGCCAAGGC 2388 Query 16673 CGTAAGATTTATGGTTTTGG 16692 |||| | ||||| || || Sbjct 2387 CGTACCCTCTATGGATTCGG 2368 >seq2815 Length=36595 Score = 163 bits (180), Expect = 4e-36 Identities = 198/270 (73%), Gaps = 0/270 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||| | || || || |||||||| || |||||||||||||||||| Sbjct 29758 GCCAAGCGCCATCGTAAGGTGCTCCGCGACAACATCCAGGGCATCACCAAGCCAGCTATC 29817 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| ||||||||||| || || ||||| |||| || | |||| || |||| Sbjct 29818 CGTCGTCTTGCTCGTCGTGGAGGTGTGAAGCGCATCTCCGGTCTTATCTACGAGGAGACA 29877 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || ||||| | ||||| ||| ||| |||| || || || ||| |||| Sbjct 29878 CGTGGAGTGCTGAAGGTGTTCCTTGAGAACGTCATCCGCGACGCCGTCACCTACTGCGAG 29937 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || || ||||| |||||| | ||||| ||||||| || | || || ||||| Sbjct 29938 CACGCCAAGCGCAAGACCGTCACCGCTATGGACGTCGTCTACGCCCTCAAGCGCCAAGGA 29997 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAATCT 16702 || | | || ||||| ||| | |||||| Sbjct 29998 CGCACCCTCTACGGTTTCGGAGGATAATCT 30027 Score = 163 bits (180), Expect = 4e-36 Identities = 198/270 (73%), Gaps = 0/270 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||||| || || || |||||||| || |||||||||||||||||| Sbjct 30800 GCCAAGCGCCATCGCAAGGTGCTCCGCGACAACATCCAGGGCATCACCAAGCCAGCTATC 30859 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| ||||||||||| || || ||||| |||| || | |||| || |||| Sbjct 30860 CGTCGTCTTGCTCGTCGTGGAGGTGTGAAGCGCATCTCCGGTCTTATCTACGAGGAGACA 30919 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || ||||| | ||||| ||| ||| |||| || || || ||| |||| Sbjct 30920 CGTGGAGTGCTGAAGGTGTTCCTTGAGAACGTCATCCGCGACGCCGTCACCTACTGCGAG 30979 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || || ||||| |||||| | ||||| ||||||| || | || || ||||| Sbjct 30980 CACGCCAAGCGCAAGACCGTCACCGCTATGGACGTCGTCTACGCCCTCAAGCGCCAAGGA 31039 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAATCT 16702 || | | || ||||| ||| | ||| || Sbjct 31040 CGCACCCTCTACGGTTTCGGAGGATAAGCT 31069 Score = 127 bits (140), Expect = 3e-25 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 16472 GGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCT 16531 |||||||| || ||||| ||||| ||||| || |||||||| || || |||||||| ||| Sbjct 301 GGAATCACGAAACCAGCCATCCGCCGTCTCGCACGTCGTGGAGGCGTGAAGCGTGTTTCT 360 Query 16532 GGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCAT 16591 ||| | | || || |||| || | || ||| | | |||||| | | ||| |||| Sbjct 361 GGACTCATATACGAGGAGACCCGAGGAGTGCTGAGGGTGTTCCTCGAAAACGTGATCCGC 420 Query 16592 GATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTC 16651 || || || ||| ||||||||| || || |||||||||||| ||||||| ||||| Sbjct 421 GACGCCATCACCTACTGCGAGCACGCCAAGCGCAAGACTGTCACCGCCATGGACGTCGTC 480 Query 16652 TATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 || || | || || || || || | | || ||||| ||| | ||| Sbjct 481 TACGCCCTCAAGCGCCAGGGACGCACCCTCTACGGTTTCGGAGGATAA 528 >seq12453 Length=11262 Score = 100 bits (110), Expect = 4e-17 Identities = 111/148 (75%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||||| ||||| || |||||||| || ||||||||||| || ||| Sbjct 150 GCCAAGCGCCATCGCAAGGTGCTTCGCGACAACATCCAGGGCATCACCAAGCCGGCCATC 91 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || |||||||| |||||||| || || ||||| |||| || | |||| || |||| Sbjct 90 CGCCGTCTGGCCCGTCGTGGAGGTGTGAAGCGCATCTCCGGCCTCATCTACGAGGAGACC 31 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGA 16580 || | || ||||| | |||||| ||| Sbjct 30 CGCGGAGTGCTGAAGGTGTTCCTCGAGA 3 >seq24816 Length=1843 Score = 80.6 bits (88), Expect = 4e-11 Identities = 68/84 (81%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 16609 CGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCA 16668 ||||||||| || || |||||||||||| |||||||| ||||||| || | || || || Sbjct 31 CGAGCACGCCAAGCGCAAGACTGTCACCGCCATGGATGTCGTCTACGCCCTCAAGCGCCA 90 Query 16669 AGGCCGTAAGATTTATGGTTTTGG 16692 |||||||| | ||||| ||||| Sbjct 91 AGGCCGTACCCTCTATGGATTTGG 114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79016451203715