Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oesophagostomum_20dentatum_20[genbank_20GCA_5F000797555.1_202014-12- 15] 64,255 sequences; 443,017,110 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq52051 100 2e-16 seq1138 93.3 3e-14 seq23586 91.5 1e-13 seq462 91.5 1e-13 seq24355 86.0 4e-12 seq61737 82.4 5e-11 seq11047 82.4 5e-11 >seq52051 Length=4564 Score = 100 bits (110), Expect = 2e-16 Identities = 67/75 (89%), Gaps = 5/75 (7%) Strand=Plus/Plus Query 25907 CGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAATC 25961 ||||||||||||||||||||||||||||||||| ||||| || ||||||||||||| Sbjct 1 CGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGTTAGGGACAGTGGGAATCTCGTTAATC 60 Query 25962 CTTTCATGCGCGTCA 25976 | ||||||||||||| Sbjct 61 CATTCATGCGCGTCA 75 >seq1138 Length=71339 Score = 93.3 bits (102), Expect = 3e-14 Identities = 120/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 6321 CCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAG 6380 ||||| ||||| ||||| |||||||| ||||| ||||| | | |||| ||||||||| Sbjct 58635 CCGACCAAATACTTCGGCTGCGAACTGGGCGCACAGACCAACTATGATGCGAAAAACGAG 58576 Query 6381 CGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTT 6440 || | |||||| || ||| ||| || | || ||| |||||||| | ||||| || || Sbjct 58575 CGTTACATCGTGAATGGAGAACATGACGCCGCGAAGTTGCAGGACATTCTTGATGGTTTC 58516 Query 6441 ATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCG 6486 || || || || || || | | ||||| || || || |||| Sbjct 58515 ATCAAAAAATTCGTTCTTTGCCCTGCGTGCGAGAATCCAGAAACCG 58470 >seq23586 Length=2010 Score = 91.5 bits (100), Expect = 1e-13 Identities = 67/78 (86%), Gaps = 5/78 (6%) Strand=Plus/Minus Query 25904 GCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTA 25958 ||||||||||||||||||||||||| | |||||||| ||||| || |||||||||| Sbjct 1494 GCCCGTTCCCTTGGCTGTGGTTTCGTTGGATAGTAGCTAGGGACAATGGGAATCTCGTTA 1435 Query 25959 ATCCTTTCATGCGCGTCA 25976 |||| ||||||| ||||| Sbjct 1434 ATCCATTCATGCACGTCA 1417 >seq462 Length=97523 Score = 91.5 bits (100), Expect = 1e-13 Identities = 68/80 (85%), Gaps = 5/80 (6%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||| |||| |||| |||||||||||||||||||||| ||||| || |||||||| Sbjct 4855 AAGCACGTTTGCTTGACTGTGGTTTCGCTAGATAGTAGTTAGGGACAGCGGGAATCTCGT 4796 Query 25957 TAATCCTTTCATGCGCGTCA 25976 |||||| ||||||||||||| Sbjct 4795 TAATCCATTCATGCGCGTCA 4776 >seq24355 Length=1900 Score = 86.0 bits (94), Expect = 4e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 38178 CCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGC 38237 || ||||| || || ||||| ||||| | |||| ||| || || ||| ||| || | Sbjct 122 CCAGCAAAAATAAGACGTTGCTGATCCGGTGGGATGCCCTCCTTATCCTGAATCTTCGCC 181 Query 38238 TTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAG 38297 |||||||||| || |||||| | ||| ||||| | || || || || || |||| | Sbjct 182 TTCACATTCTCGATAGTATCGGAAGCTTCGACTTCGAGGGTGATCGTCTTTCCGGTCAGG 241 Query 38298 GTTTTCACGAATATCTGCAT 38317 || |||||||| |||||||| Sbjct 242 GTCTTCACGAAGATCTGCAT 261 >seq61737 Length=3671 Score = 82.4 bits (90), Expect = 5e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234 || |||||||| || || | ||| ||||| | |||| |||||| ||||| |||||| Sbjct 3278 TTACCGGCAAAGATGAGCCTTTGCTGATCTGGTGGGATGCCTTCCTTGTCTTGAATTTTG 3337 Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294 |||||||||| | ||||||| | || ||||| | ||||| || || || || Sbjct 3338 GCTTTCACATTCTCAATAGTATCTGAAGCCTCGACTTCCAGGGTAATGGTCTTTCCAGTA 3397 Query 38295 AAGGTTTTCACGAATATCTGCAT 38317 | ||||||||||| || ||||| Sbjct 3398 AGTGTTTTCACGAAAATTTGCAT 3420 >seq11047 Length=6348 Score = 82.4 bits (90), Expect = 5e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 19949 CTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGG 20008 |||||||| ||||||||| ||||||||| ||| ||||||||| ||||||| ||||| Sbjct 3804 CTCTCTTCGAAGTTCTTTGCAACTTTCCTACACAGTACTTGTTTGCTATCGAATTCGCGT 3863 Query 20009 TAATATTTAGCCTTA 20023 ||||||||||||| Sbjct 3864 CTATATTTAGCCTTA 3878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334684900230905