Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oesophagostomum_20dentatum_20[genbank_20GCA_5F000797555.1_202014-12- 15] 64,255 sequences; 443,017,110 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq61737 86.0 5e-12 seq24355 86.0 5e-12 >seq61737 Length=3671 Score = 86.0 bits (94), Expect = 5e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| || || || || || ||||| |||| |||||||| || | | Sbjct 3106 ATGCAGATTTTTGTGAAGACCTTGACGGGAAAAACCATCACCCTTGAAGTCGAGGCGTCG 3047 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | ||| || ||||| |||||||| || |||||||||||||| Sbjct 3046 GACACCATTGAGAATGTGAAAGCGAAGATTCAGGACAAGGAAGGCATTCCACCCGATCAG 2987 Query 22339 CAACGTCTTATATTTGCCGG 22358 || | || || || ||||| Sbjct 2986 CAGAGGCTCATTTTCGCCGG 2967 Score = 82.4 bits (90), Expect = 6e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || ||||| | || || || || | || || ||||| || | | Sbjct 3420 ATGCAAATTTTCGTGAAAACACTTACTGGAAAGACCATTACCCTGGAAGTCGAGGCTTCA 3361 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | ||| ||||||||||||||||| || || ||||| ||||| Sbjct 3360 GATACTATTGAGAATGTGAAAGCCAAAATTCAAGACAAGGAAGGCATCCCACCAGATCAG 3301 Query 22339 CAACGTCTTATATTTGCCGGCAA 22361 ||| | || || |||||||| || Sbjct 3300 CAAAGGCTCATCTTTGCCGGTAA 3278 >seq24355 Length=1900 Score = 86.0 bits (94), Expect = 5e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || ||| |||| || ||||| ||| | || Sbjct 261 ATGCAGATCTTCGTGAAGACCCTGACCGGAAAGACGATCACCCTCGAAGTCGAAGCTTCC 202 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | || || ||||| || |||||||| || ||||| ||||| Sbjct 201 GATACTATCGAGAATGTGAAGGCGAAGATTCAGGATAAGGAGGGCATCCCACCGGATCAG 142 Query 22339 CAACGTCTTATATTTGCCGG 22358 ||||||||||| ||||| || Sbjct 141 CAACGTCTTATTTTTGCTGG 122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419399307724075