Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oesophagostomum_20dentatum_20[genbank_20GCA_5F000797555.1_202014-12- 15] 64,255 sequences; 443,017,110 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq61737 138 2e-27 seq58085 87.8 3e-12 seq2258 87.8 3e-12 seq1129 87.8 3e-12 seq57506 86.0 1e-11 seq17642 86.0 1e-11 seq15988 86.0 1e-11 seq9793 86.0 1e-11 seq159 84.2 4e-11 >seq61737 Length=3671 Score = 138 bits (152), Expect = 2e-27 Identities = 115/141 (82%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 |||||||| ||||| || || || ||||||||||||||||||||||| |||||||| || Sbjct 2967 CCGGCGAAAATGAGCCTCTGCTGATCGGGTGGAATGCCTTCCTTGTCCTGAATCTTCGCT 3026 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 || || ||| |||||||| | | || ||||| | |||||||||||||||||| | | Sbjct 3027 TTCACATTCTCAATGGTGTCCGACGCCTCGACTTCAAGGGTGATGGTTTTTCCCGTCAAG 3086 Query 68442 GTCTTGACGAATATCTGCATT 68462 ||||| || || ||||||||| Sbjct 3087 GTCTTCACAAAAATCTGCATT 3107 Score = 113 bits (124), Expect = 8e-20 Identities = 112/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377 ||| ||||| || ||||| ||||| || || ||||| |||||||||||||||||||| || Sbjct 3277 CTTACCGGCAAAGATGAGCCTTTGCTGATCTGGTGGGATGCCTTCCTTGTCTTGAATTTT 3336 Query 68378 TGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437 || || || ||| || || |||| | || ||||||| ||| ||||| ||||| || Sbjct 3337 GGCTTTCACATTCTCAATAGTATCTGAAGCCTCGACTTCCAGGGTAATGGTCTTTCCAGT 3396 Query 68438 GAGGGTCTTGACGAATATCTGCATT 68462 || || || ||||| || |||||| Sbjct 3397 AAGTGTTTTCACGAAAATTTGCATT 3421 >seq58085 Length=2248 Score = 87.8 bits (96), Expect = 3e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 |||||||| ||||| || || || ||||||||||||||||||||||||||||||||||| Sbjct 2173 CCGGCGAAAATGAGCCTCTGCTGATCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCT 2232 Query 68382 TTGACGGCCTCGATGG 68397 || || ||| |||| Sbjct 2233 TTCACATTCTCAATGG 2248 >seq2258 Length=59966 Score = 87.8 bits (96), Expect = 3e-12 Identities = 68/80 (85%), Gaps = 1/80 (1%) Strand=Plus/Plus Query 84449 CGAGAGCG-CCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGG 84507 |||| ||| |||||||||||||||||| ||||| | || ||||||| || | |||| || Sbjct 36303 CGAGTGCGGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGG 36362 Query 84508 GTTCGAGCCCCACATCGGGC 84527 ||||||||||| |||||||| Sbjct 36363 GTTCGAGCCCCGCATCGGGC 36382 >seq1129 Length=47494 Score = 87.8 bits (96), Expect = 3e-12 Identities = 68/80 (85%), Gaps = 1/80 (1%) Strand=Plus/Plus Query 84449 CGAGAGC-GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGG 84507 |||| || ||||||||||||||||||| ||||| | || ||||||| || | |||| || Sbjct 20932 CGAGTGCAGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGG 20991 Query 84508 GTTCGAGCCCCACATCGGGC 84527 ||||||||||| |||||||| Sbjct 20992 GTTCGAGCCCCGCATCGGGC 21011 >seq57506 Length=2332 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || | |||| |||||||||| Sbjct 2056 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 1997 Query 84516 CCCACATCGGGC 84527 ||| |||||||| Sbjct 1996 CCCGCATCGGGC 1985 >seq17642 Length=3553 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || | |||| |||||||||| Sbjct 150 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 91 Query 84516 CCCACATCGGGC 84527 ||| |||||||| Sbjct 90 CCCGCATCGGGC 79 >seq15988 Length=4714 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || | |||| |||||||||| Sbjct 3684 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 3743 Query 84516 CCCACATCGGGC 84527 ||| |||||||| Sbjct 3744 CCCGCATCGGGC 3755 >seq9793 Length=7818 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || | |||| |||||||||| Sbjct 7804 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 7745 Query 84516 CCCACATCGGGC 84527 ||| |||||||| Sbjct 7744 CCCGCATCGGGC 7733 >seq159 Length=218524 Score = 84.2 bits (92), Expect = 4e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || ||||| || || | || || || || ||||| || || ||||| || || || ||| Sbjct 175903 CCTGCGAAAATCAGACGCTGCTGATCTGGAGGAATTCCCTCTTTGTCCTGGATTTTAGCC 175844 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 ||||| |||||||||||||| | ||| || || ||| || || ||||| || || Sbjct 175843 TTGACATTCTCGATGGTGTCTGACGCTTCAACCTCAGGGGTAATTGTCTTTCCAGTAAGC 175784 Query 68442 GTCTTGACGAATATCTGCATTATG 68465 || || ||||| || |||||| || Sbjct 175783 GTTTTAACGAAAATTTGCATTGTG 175760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 920882164408600