Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oesophagostomum_20dentatum_20[genbank_20GCA_5F000797555.1_202014-12- 15] 64,255 sequences; 443,017,110 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq24355 114 3e-20 >seq24355 Length=1900 Score = 114 bits (126), Expect = 3e-20 Identities = 110/141 (78%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || || || || ||||| || ||| |||||| || || |||||||| || ||||| Sbjct 122 CCAGCAAAAATAAGACGTTGCTGATCCGGTGGGATGCCCTCCTTATCCTGAATCTTCGCC 181 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 ||||| || || |||| |||| | ||| |||||||| ||||||||||| |||||||| Sbjct 182 TTCACATTCTCGATAGTATCGGAAGCTTCGACTTCGAGGGTGATCGTCTTTCCGGTCAGG 241 Query 288454 GTCTTGACGAATATCTGCATT 288474 ||||| ||||| ||||||||| Sbjct 242 GTCTTCACGAAGATCTGCATT 262 Score = 105 bits (116), Expect = 2e-17 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 ||||| ||||| || ||||| ||| ||||||||| ||||| ||||||||||| || Sbjct 1718 CCTGCAAAGATAAGGCGCTGCTGATCTGGTGGGATTCCCTCTTTGTCCTGGATTTTGGCC 1777 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 ||||| ||||| || | || | || ||||| || ||||||||||| || ||||| Sbjct 1778 TTCACATTTTCGATTGTGTCTGATGCCTCGACTTCCAGGGTGATCGTCTTTCCTGTCAGC 1837 Query 288454 GTCTTGACGAATATCTGCATT 288474 || || ||||| ||||||||| Sbjct 1838 GTTTTCACGAAAATCTGCATT 1858 Score = 95.1 bits (104), Expect = 3e-14 Identities = 108/144 (75%), Gaps = 6/144 (4%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTTATCCTGGATTTTC 288390 || || || || || ||||| ||| ||||| |||||| || || |||||||||||| Sbjct 424 CCAGCAAATATGAGTCGCTGCTGA---TCTGGCGGGATTCCCTCCTTGTCCTGGATTTTC 480 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 || |||||||| || || | || | ||| ||||| || ||||| ||||| || ||| Sbjct 481 GCCTTCACGTTCTCAATTGTGTCAGAAGCTTCGACTTCAAGTGTGATAGTCTTTCCTGTC 540 Query 288451 AGAGTCTTGACGAATATCTGCATT 288474 || ||||| ||||| || |||||| Sbjct 541 AGGGTCTTCACGAAGATTTGCATT 564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178683229239890