Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oesophagostomum_20dentatum_20[genbank_20GCA_5F000797555.1_202014-12- 15] 64,255 sequences; 443,017,110 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq58607 98.7 4e-15 seq159 93.3 2e-13 seq15521 91.5 6e-13 seq61737 84.2 9e-11 >seq58607 Length=3306 Score = 98.7 bits (108), Expect = 4e-15 Identities = 189/278 (68%), Gaps = 3/278 (1%) Strand=Plus/Plus Query 451319 GATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGAT 451378 || || || || |||||||| ||||| ||||| || |||| || ||||| || || ||| Sbjct 333 GACGCTGTCATCACTGTTCCTGCTTACTTCAACGACTCACAGCGTCAAGCCACAAAGGAT 392 Query 451379 GCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCT 451438 |||||| || | || || |||||||||||||| || || || || || || |||||| Sbjct 393 GCAGGAGCCATCTCAGGATTGAATGTTCTTCGAATAATCAACGAGCCCACTGCCGCTGCT 452 Query 451439 CTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGAT 451498 | || ||||| || | || ||| | || ||| || | | | |||||| Sbjct 453 ATCGCTTATGGTCTCGACAA---AAAGGGCCAAGGAGAGCGTAACGTGCTCATTTTTGAT 509 Query 451499 TTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTA 451558 | || || || || ||| || | || | || || ||||| | || ||||| Sbjct 510 CTCGGAGGTGGTACCTTCGATGTGTCCATCCTGACCATCGAGGATGGAATCTTCGAAGTG 569 Query 451559 AAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGA 451596 ||| |||| ||||||||| || || ||||| ||||| Sbjct 570 AAGTCAACTGCTGGTGATACCCACCTTGGAGGAGAAGA 607 >seq159 Length=218524 Score = 93.3 bits (102), Expect = 2e-13 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | |||||||||||||| || ||||| || || ||||| | ||| |||||| | || Sbjct 175763 AATGCAAATTTTCGTTAAAACGCTTACTGGAAAGACAATTACCCCTGAGGTTGAAGCGTC 175822 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 || | ||| || | | || ||||| || || || || ||||||||||| ||||| Sbjct 175823 AGACACCATCGAGAATGTCAAGGCTAAAATCCAGGACAAAGAGGGAATTCCTCCAGATCA 175882 Query 391169 ACAACGTTTAATTTTCTCAGG 391189 || ||| | |||||| |||| Sbjct 175883 GCAGCGTCTGATTTTCGCAGG 175903 >seq15521 Length=3453 Score = 91.5 bits (100), Expect = 6e-13 Identities = 98/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 451319 GATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGAT 451378 || || ||||| |||||||| |||| ||||| || | ||||| || || || || ||| Sbjct 3261 GACGCCGTAATCACTGTTCCTGCTTTCTTCAACGACTCTCAACGTCAGGCCACAAAGGAT 3202 Query 451379 GCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCT 451438 |||||| ||| || || || ||||||||||||||| | || ||||| || | || ||| Sbjct 3201 GCAGGAGTTATGGCAGGATTGAATGTTCTTCGAATTCTCAACGAACCAACCACTGCCGCT 3142 Query 451439 CTAGCATATG 451448 | || |||| Sbjct 3141 ATCGCTTATG 3132 >seq61737 Length=3671 Score = 84.2 bits (92), Expect = 9e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | |||||||| |||||||| ||||| || || ||||| || || || || | || Sbjct 3421 AATGCAAATTTTCGTGAAAACACTTACTGGAAAGACCATTACCCTGGAAGTCGAGGCTTC 3362 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 |||| ||||| | | ||| ||||||||||| |||||||| || || || ||||| Sbjct 3361 AGATACTATTGAGAATGTGAAAGCCAAAATTCAAGACAAGGAAGGCATCCCACCAGATCA 3302 Query 391169 ACAA 391172 ||| Sbjct 3301 GCAA 3298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1974091855869540