Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oesophagostomum_20dentatum_20[genbank_20GCA_5F000797555.1_202014-12- 15] 64,255 sequences; 443,017,110 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq58607 156 3e-32 seq6330 86.0 5e-11 >seq58607 Length=3306 Score = 156 bits (172), Expect = 3e-32 Identities = 661/1028 (64%), Gaps = 17/1028 (2%) Strand=Plus/Minus Query 517289 AAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAA 517348 |||| |||| | || ||||| || || || || | | ||||||||||| || | Sbjct 1352 AAATAAAATCTTACCTCAATCTGTGGAACACCACGAGGTGCAGGTGGGATTCCGGATAGC 1293 Query 517349 TTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGG 517408 | ||| | || || || || || || || | | || || ||||| || | ||| Sbjct 1292 TCGAATTTCCCAAGCAGGTTGTTGTCCTTGGTCATTGCACGCTCTCCCTCAAACACCTGG 1233 Query 517409 AT-AGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTGGATTTT-TTACAAG 517466 || |||| | ||| || || || || || || || || ||||| | | ||| | Sbjct 1232 ATGAGTA-CACCAGGCTGGTTGTCGGAGTAGGTGGTGAAGG-TCTGGCTGGTCTTAGTCG 1175 Query 517467 GAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCTGCTGTTTCTAAACCAA 517526 | || || || || || | ||| | | |||||| | ||| || || || || | ||||| Sbjct 1174 GGATGGTGGTATTCCTCTTAATCAGAGCGGTCATCACACCTCCAGCGGTCTCAATACCAA 1115 Query 517527 GAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAA 517586 | || || |||| ||| |||| || | | | ||| | | | ||| | | ||| Sbjct 1114 GTGACAGGGGAGCGACGTCAAGAAGCAGCAGGTCTTGCACTGTCTCAGACTTGTCACCGG 1055 Query 517587 CAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTC-ATCAGGATTAACAGTT 517645 ||| ||||| ||||| | ||||||||| || || || || || ||| || || | | Sbjct 1054 AAAGGATAGCAGCTTGCACAGCAGCACCGTAGGCGACGGCCTCGATCGGGGTTGATGGAC 995 Query 517646 TCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTT-ACCTTAGGAATACG 517704 | || |||| || ||| ||| | | ||||| || | ||| ||||| || || || Sbjct 994 TTGTTCAGTTCCTTGCCAGAGAAGAGGTCGGAAAGCAGCT-TCTGGACCTTGGGGATTCG 936 Query 517705 AGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAA 517764 || |||||||| || | || || || || | ||| || |||| || | ||| Sbjct 935 AGTGGATCCTCCGACGAGGACGATGTCGTGGATCTGGCTCTTGTCCATCTTGGCGTCCCT 876 Query 517765 TAAAACTTTTTCAACGGGTTCAAGACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAA 517824 | || || ||||| || | | || || | || | |||||||| ||||| Sbjct 875 CAGCGACTTCTCGACGGGGTCCATGGTGGATCGGAAGAGATCAGCGCAAAGTTCCTCGAA 816 Query 517825 TTTAGCTCTAGTAAGAGTGACATTATAA-TCAATTCCTTCGAACAAAGAATCAACTTCAA 517883 | || | ||||| || | || || || || || ||||| | || || | ||| | Sbjct 815 TCGGGCACGAGTAAT-GTTAGTGTAGAAGTCGATACCCTCGAAGAGCGAGTCGATTTCGA 757 Query 517884 TCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTC 517943 ||| || |||| |||||| || || | || || || ||||| || || || | |||| Sbjct 756 TCGAAGCCTGAGACGAAGACGACAGCGTGCGCTTGGCGCGTTCGCAAGCAGTACGAAGTC 697 Query 517944 TTCGTAAGGCTTTTGC-TGATTGATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCA 518002 ||| | || | | | || || | ||| | || | ||| | |||||| || | Sbjct 696 GTCGGAGAGCACGAGGGTTAGTG-TTGAGATCCTTCTTGTGTTTGCGCTTGAATTCGGCG 638 Query 518003 ACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGAC 518062 || | | || | || || || || ||||| ||||| | | |||| || | Sbjct 637 ACGAAGTGGTTGACCATTCGGTTGTCGAAGTCTTCTCCTCCAAGGTGGGTATCACCAGCA 578 Query 518063 GTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCA 518122 || | | |||| ||| | |||||| || | | || | | ||||| ||| ||| Sbjct 577 GTTGACTTCACTTCGAAGATTCCATCCTCGATGGTCAGGATGGACACATCGAAGGTACCA 518 Query 518123 CCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGG---TTTTTATCAAGACCA 518179 || || | ||||||||| || || || ||| ||||| ||||| || |||||| Sbjct 517 CCTCCGAGATCAAAAATGAGCACGTTACGCTCTC---CTTGGCCCTTTTTGTCGAGACCA 461 Query 518180 TACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATT 518239 || || | |||||| ||||| || || || || |||| | |||||| | || | || Sbjct 460 TAAGCGATAGCAGCGGCAGTGGGCTCGTTGATTATTCGAAGAACATTCAATCCTGAGATG 401 Query 518240 CTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATA 518299 ||||||||| || |||||||| | ||||| ||||| || || ||||||||||| || Sbjct 400 GCTCCTGCATCCTTTGTGGCTTGACGCTGTGAGTCGTTGAAGTAAGCAGGAACAGTGATG 341 Query 518300 ACGGCATC 518307 || || || Sbjct 340 ACAGCGTC 333 >seq6330 Length=14943 Score = 86.0 bits (94), Expect = 5e-11 Identities = 115/160 (72%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 || || |||||||| || || | || ||||| || || || || || |||| | || Sbjct 6578 TTCTTGTCAAGACCGTAGGCGATGGCGGCAGCTGTCGGCTCGTTGATGATTCGGACGACG 6519 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || | ||||| || |||| ||||| ||||||||||| | || | |||||| || || Sbjct 6518 TTCAATCCAGCGATGGTTCCGGCATCCTTAGTGGCTTGACGCTGGGCATCGTTGAAGTAG 6459 Query 518285 GCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAA 518324 ||||| || || | |||||| | ||||||| || |||| Sbjct 6458 GCAGGGACGGTGACAACGGCGTGCTTTACTTCCTTTCCAA 6419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3777633855244030