Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oesophagostomum_20dentatum_20[genbank_20GCA_5F000797555.1_202014-12-
15] 64,255 sequences; 443,017,110 total letters
Query= NC_014765.1
Length=198519
Score E
Sequences producing significant alignments: (Bits) Value
seq58607 250 3e-61
seq15521 181 1e-40
seq6330 176 6e-39
seq63604 125 9e-24
>seq58607
Length=3306
Score = 250 bits (276), Expect = 3e-61
Identities = 573/855 (67%), Gaps = 7/855 (1%)
Strand=Plus/Minus
Query 6888 TCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTCATAATACCACCCATAGTTT 6947
|||||| || || || ||||| ||| ||| | | |||||| | ||| || || |
Sbjct 1183 TCTTAGTCGGGATGGTGGTATTCCTCTTAATCAGAGCGGTCATCACACCTCCAGCGGTCT 1124
Query 6948 CGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTCTTGAACAGATTCGTTCC 7007
| | ||||| ||||| || | ||||| | || | ||||||||| || | || |
Sbjct 1123 CAATACCAAGTGACAGGGGAGCGACGTCAAGAAGCAGCAGGTCTTGCACTGTCTCAGACT 1064
Query 7008 CTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTC-ATCGGGG 7066
||||| | | ||| || ||||| || | || ||||| ||||| ||||| |||||||
Sbjct 1063 TGTCACCGGAAAGGATAGCAGCTTGCACAGCAGCACCGTAGGCGACGGCCTCGATCGGGG 1004
Query 7067 TTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTC 7126
|| || | || |||||||| || || || || || | || | || | ||
Sbjct 1003 TTGATGGACTTGTTCAGTTCCTTGCCAGAGAAGAGGTCGGAAAGCAGCTTCTGGACCTTG 944
Query 7127 GGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGAT-TTATCGATCTT 7185
|||||||| || ||||| ||||| | ||||| || | | | | | | || || |||||
Sbjct 943 GGGATTCGAGTGGATCCTCCGACGAGGACGATGTCGTGGA-TCTGGCTCTTGTCCATCTT 885
Query 7186 TGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAG 7245
| ||| | || | || ||||| || ||||| ||||| | || || ||
Sbjct 884 GGCGTCCCTCAGCGACTTCTCGACGGGGTCCATGGTGGATCGGAAGAGATCAGCGCAAAG 825
Query 7246 TTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATC 7305
|||||| || || ||||| |||||| || ||||| || | || ||| | | ||| ||
Sbjct 824 TTCCTCGAATCGGGCACGAGTAATGTTAGTGTAGAAGTCGATACCCTCGAAGAGCGAGTC 765
Query 7306 AATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGT 7365
||||| || | | || | || || || | ||| ||||| ||||| || || || ||
Sbjct 764 GATTTCGATCGAAGCCTGAGACGAAGACGACAGCGTGCGCTTGGCGCGTTCGCAAGCAGT 705
Query 7366 TCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAA 7425
|| | || || || ||||| |||||| | | ||| ||||| ||||| || || ||
Sbjct 704 ACGAAGTCGTCGGAGAGCACGAGGGTTAGTGTTGAGATCCTTCTTGTGTTTGCGCTTGAA 645
Query 7426 CTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATC 7485
|| | |||||| | | || ||||| ||||| || || | ||| |||||
Sbjct 644 TTCGGCGACGAAGTGGTTGACCATTCGGTTGTCGAAGTCTTCTCCTCCAAGGTGGGTATC 585
Query 7486 CCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAA 7545
|| || || | || ||||| ||||| || | || ||| | | | || ||||| ||
Sbjct 584 ACCAGCAGTTGACTTCACTTCGAAGATTCCATCCTCGATGGTCAGGATGGACACATCGAA 525
Query 7546 CGTACCACCACCCAGGTCAAAAATGAGTACGTT-CG-TATCGTCGTCTTTGTTCTTATCG 7603
|||||||| || || ||||||||||| ||||| || | || | | | || || |||
Sbjct 524 GGTACCACCTCCGAGATCAAAAATGAGCACGTTACGCTCTCCTTGGC--CCTTTTTGTCG 467
Query 7604 AGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCA 7663
||||| || |||||||| || || || || || || || || |||||| |||| ||
Sbjct 466 AGACCATAAGCGATAGCAGCGGCAGTGGGCTCGTTGATTATTCGAAGAACATTCAATCCT 407
Query 7664 GCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACC 7723
| || | | | ||||| || || ||||| || || || ||||| ||||| || || ||
Sbjct 406 GAGATGGCTCCTGCATCCTTTGTGGCTTGACGCTGTGAGTCGTTGAAGTAAGCAGGAACA 347
Query 7724 GTTACGACCGCGTCC 7738
|| | ||| ||||||
Sbjct 346 GTGATGACAGCGTCC 332
>seq15521
Length=3453
Score = 181 bits (200), Expect = 1e-40
Identities = 559/857 (65%), Gaps = 11/857 (1%)
Strand=Plus/Plus
Query 6888 TCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTCATAATACCACCCATAGTTT 6947
|||||| ||| || ||||||||||| || | || ||||| | ||| || | |||||
Sbjct 2411 TCTTAGTTGGGATGATCGTATTTCTCTTGATCAAAGGAGTCATCAGACCTCCTACAGTTT 2470
Query 6948 CGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTCTTGAACAGATTCGTTCC 7007
| | ||||| || || || ||||| | |||| ||| || || | | || |
Sbjct 2471 CAATGCCAAGTGAGAGGGGAACTACGTCAAGAAGTAGCAGATCCTGCAGTGTCTCAGACT 2530
Query 7008 CTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGT 7067
||||| | | ||| || ||||| || | || ||||| || | |||||| |||||
Sbjct 2531 TGTCACCAGAAAGGATAGCAGCTTGTACAGCAGCGCCGTAAGCTATGGCCTCAGAGGGGT 2590
Query 7068 TAATCGTTTTATTCAGTTCTTTACCGTTAAAATA-ATCCGATAACATTTGTTGAATTTTC 7126
| || | | | ||||| || || || | |||| | |||||| | ||||| | | | |||
Sbjct 2591 TGATGGATGTGTTCAGCTCCTTGCC-TGAAAACAGATCCGAGAGCATTTCTCGCACTTTG 2649
Query 7127 GGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGA--TTTATCGATCT 7184
| || || || | ||||||||| | || || || | | | ||| || || || |
Sbjct 2650 TGCATACGAGTGGCTCCACCGACGAGAATTATGTCGTGGA--TCCGACTCTTGTCCATGT 2707
Query 7185 TTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACA 7244
| | |||| |||| ||||| || || | ||| || ||||| | ||| || |
Sbjct 2708 TAGCATCTCTCAGTGCCTTTTCAACCGGGTTCATGAGGTTTCGGAAGAGGTCGCCGCAAA 2767
Query 7245 GTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAAT 7304
| || || || ||||| |||||| || ||||| |||| || | || | | ||| |
Sbjct 2768 GATCTTCGAAGTCGGCACGAGTAATGTTAGTGTAGAAGTCAATGCAGCCGCAAAGCGAGT 2827
Query 7305 CAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCG 7364
| || || || | | | | | || || | ||| | || || || ||||| || |
Sbjct 2828 CGATCTCGATCGAAGCCCGAGAAGAGGATGACAGCGTGTGTTTGGCACGTTCACAAGCAG 2887
Query 7365 TTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAA 7424
| || | || |||| ||||| |||| || | ||| || | ||||| || || |
Sbjct 2888 TGCGAAGTCGTTGAAGCGCACGAGGGTCGGCGCTGAGATCCTTGTGGTGTTTGCGCTTGA 2947
Query 7425 ACTCTTCAGAGAAGTGTCGAAGGAGTC--TCGAATCGAAATCTTCACCACCCAA-GTGTG 7481
| || | ||| || || | | || ||| ||||| ||||| || |||| ||| |
Sbjct 2948 ATTCAGCGATGAAATGCCGGACCATTCGATCG--TCGAAGTCTTCTCCGGCCAAGGTGGG 3005
Query 7482 TATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACAT 7541
|||| || || | ||| ||||| | || || | || ||| |||| | || || |
Sbjct 3006 TATCACCAGCAACTGATTTTACTTCGATGAATCCATCCTCGATGGTTAAGATGGATACGT 3065
Query 7542 CAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTAT 7601
|||| ||| || || || ||||||| ||| || ||| || | || | | |||
Sbjct 3066 CAAAGAAACCGCCTCCGAGATCAAAAACGAGCACATTCCGCTCTCCTTCACACTCCCTAT 3125
Query 7602 CGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGC 7661
||| | | || |||||||| || | |||||||| || | ||| |||||| |||| |
Sbjct 3126 CGAAAGCATAAGCGATAGCGGCAGTGGTTGGTTCGTTGAGAATTCGAAGAACATTCAATC 3185
Query 7662 CAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGA 7721
| || ||| | | ||||| || || || || ||||| || ||||| ||| | || || |
Sbjct 3186 CTGCCATAACTCCTGCATCCTTTGTGGCCTGACGTTGAGAGTCGTTGAAGAAAGCAGGAA 3245
Query 7722 CCGTTACGACCGCGTCC 7738
| || | || ||||||
Sbjct 3246 CAGTGATTACGGCGTCC 3262
>seq6330
Length=14943
Score = 176 bits (194), Expect = 6e-39
Identities = 263/370 (71%), Gaps = 5/370 (1%)
Strand=Plus/Minus
Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516
|||||||||||||| |||||||| ||||| || ||| || ||||| || | ||
Sbjct 6713 TCGAAATCTTCACCTCCCAAGTGGGTATCTCCGTTGGTGGCCAATACTTCGAATACTCCG 6654
Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576
|| ||| | | || || ||||| || ||||| || || ||||| || | || | |
Sbjct 6653 TTGTCGATGGTAAGCATGGACACATCGAAGGTACCGCCTCCGAGGTCGAATACAAGGATG 6594
Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636
| || || | | ||||| || |||||||| ||||| || || || || || ||
Sbjct 6593 T---TACGCTCTCCCTCCTTCTTGTCAAGACCGTAGGCGATGGCGGCAGCTGTCGGCTCG 6537
Query 7637 TTAATAATAC-GAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCG 7695
|| || || | || ||| ||||| ||||| || ||| | ||||| || || ||||| ||
Sbjct 6536 TTGATGATTCGGACGAC-GTTCAATCCAGCGATGGTTCCGGCATCCTTAGTGGCTTGACG 6478
Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755
|| | |||||| |||||||| ||||| || || || |||| | | |||| ||| || ||
Sbjct 6477 CTGGGCATCGTTGAAGTAGGCAGGGACGGTGACAACGGCGTGCTTTACTTCCTTTCCAAG 6418
Query 7756 ATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGC 7815
|| || || ||||| || ||||| ||| ||||||||| | || |||||||||| |
Sbjct 6417 GTATGACTCTGCGATTTCCTTCATCTTGCCAAGAACCATAGCGGAGATCTCTTCAGGGGT 6358
Query 7816 AAACTGTTTC 7825
||||| |||
Sbjct 6357 GAACTGCTTC 6348
>seq63604
Length=1305
Score = 125 bits (138), Expect = 9e-24
Identities = 517/805 (64%), Gaps = 18/805 (2%)
Strand=Plus/Plus
Query 6888 TCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTCATAATACCACCCATAGTTT 6947
|||||| || || ||||||||||| || | || ||||| | ||| || | |||||
Sbjct 508 TCTTAGTGGGGATGATCGTATTTCTCTTGATCAAAGGAGTCATCACACCTCCTACAGTTT 567
Query 6948 CGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTCTTGAACAGATTCGTTCC 7007
| | ||||| || || || ||||| | |||| || || || ||| || |||
Sbjct 568 CAATGCCAAGTGAGAGGGGAACTACGTCAAGAAGTAGTAGATCCTG--CAGGGTC--TCC 623
Query 7008 --CT--TCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCG 7063
|| ||||| | | ||| || ||||| || | || ||||| || | |||||| |
Sbjct 624 GACTTGTCACCGGAAAGGATAGCAGCTTGTACAGCAGCGCCGTAAGCTATGGCCTCAGAG 683
Query 7064 GGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATA-ATCCGATAACATTTGTTGAAT 7122
||||| || | | |||||||| || || | | || | |||||| | || || | | |
Sbjct 684 GGGTTGATGGAGGTGTTCAGTTCCTTGCC-TGAGAACAGATCCGAGAGCAGTTCTCGCAC 742
Query 7123 TTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGA--TTTATCG 7180
||| | || || || | ||||||||| | || || || | | | ||| || ||
Sbjct 743 TTTGTGCATACGAGTGGCTCCACCGACGAGAATTATGTCGTGGA--TCCGACTCTTGTCC 800
Query 7181 ATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATA 7240
|| || | |||| |||| ||||| || || | ||| || ||||| | |||
Sbjct 801 ATGTTGGCATCTCTCAGTGCCTTTTCAACCGGGTTCATGAGGTTTCGGAAGAGGTCGCCG 860
Query 7241 CACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAAC 7300
|| || || || || ||||| |||||| || ||||| |||| || | || | |
Sbjct 861 CAAAGATCTTCGAAGTCGGCACGAGTAATGTTAGTGTAGAAGTCAATGCAGCCGCAGAGT 920
Query 7301 GAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACAC 7360
|| || || || || | | | | | || || | ||| | || || || |||||
Sbjct 921 GAGTCGATCTCGATCGAAGCCCGAGAAGAGGATGACAGCGTGTGTTTGGCACGTTCACAA 980
Query 7361 GCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGT 7420
|| || || | || |||| ||||| |||| || | ||| || | ||||| ||
Sbjct 981 GCAGTACGAAGTCGTTGAAGCGCACGAGGGTCGGCGCTGAGATCCTTATGGTGTTTGCGC 1040
Query 7421 TTAAACTCTTCAGAGAAGTGTCGAAGGAGTC--TCGAATCGAAATCTTCACCACCCAAGT 7478
|| || || | ||| || || | | || ||| ||||| ||||| || || | ||
Sbjct 1041 TTGAATTCAGCGATGAAATGCCGGACCATTCGATCG--TCGAAGTCTTCTCCTCCAAGGT 1098
Query 7479 GTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAA 7538
| ||||| || || | ||| ||||| | || || | || ||| ||| | || |
Sbjct 1099 GGGTATCACCAGCAACTGATTTTACTTCGATGAATCCATCCTCGATGGTTAGTATGGACA 1158
Query 7539 CATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCT 7598
| ||||| ||| || || || || |||| ||| || ||| || | || | |
Sbjct 1159 CGTCAAAGAAACCGCCTCCGAGATCGAAAACGAGCACATTCCGCTCTCCTTCACACTCCC 1218
Query 7599 TATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCA 7658
|||||| | | || |||||||| || | |||||||| || | ||| |||||| ||||
Sbjct 1219 TATCGAAAGCATAAGCGATAGCGGCGGTGGTTGGTTCGTTGAGAATTCGAAGAACATTCA 1278
Query 7659 GGCCAGCAATAGTTGCCGCATCTTT 7683
|| || ||| | | ||||| ||
Sbjct 1279 ATCCTGCCATAACTCCTGCATCCTT 1303
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 634622669274200
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