Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oesophagostomum_20dentatum_20[genbank_20GCA_5F000797555.1_202014-12- 15] 64,255 sequences; 443,017,110 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq159 118 2e-21 seq61737 113 1e-19 seq24355 109 1e-18 >seq159 Length=218524 Score = 118 bits (130), Expect = 2e-21 Identities = 113/145 (78%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || ||||||||| || || || || || ||||||||||| || |||||||| || ||||| Sbjct 175907 CTAACCTGCGAAAATCAGACGCTGCTGATCTGGAGGAATTCCCTCTTTGTCCTGGATTTT 175848 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 |||||| ||||| |||||||| || ||| || ||| |||||| |||||||| || Sbjct 175847 AGCCTTGACATTCTCGATGGTGTCTGACGCTTCAACCTCAGGGGTAATTGTCTTTCCAGT 175788 Query 195117 CAAAGTTTTTACGAACACTTGCATT 195141 | ||||| ||||| | ||||||| Sbjct 175787 AAGCGTTTTAACGAAAATTTGCATT 175763 >seq61737 Length=3671 Score = 113 bits (124), Expect = 1e-19 Identities = 112/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||| || ||||| || | ||| || ||||| || |||||||| |||||||||||||| Sbjct 3277 CTTACCGGCAAAGATGAGCCTTTGCTGATCTGGTGGGATGCCTTCCTTGTCTTGAATTTT 3336 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 || || |||||||| || || ||| || ||||| ||||||| |||||||| || Sbjct 3337 GGCTTTCACATTCTCAATAGTATCTGAAGCCTCGACTTCCAGGGTAATGGTCTTTCCAGT 3396 Query 195117 CAAAGTTTTTACGAACACTTGCATT 195141 | ||||| ||||| | ||||||| Sbjct 3397 AAGTGTTTTCACGAAAATTTGCATT 3421 Score = 95.1 bits (104), Expect = 3e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || ||| ||||| || || | || || || || ||||||||||| ||||| ||||| || Sbjct 2963 CTCACCGGCGAAAATGAGCCTCTGCTGATCGGGTGGAATGCCTTCCTTGTCCTGAATCTT 3022 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 || || ||||||||||||||||| || ||||||||||| | || ||||| || Sbjct 3023 CGCTTTCACATTCTCAATGGTGTCCGACGCCTCGACTTCAAGGGTGATGGTTTTTCCCGT 3082 Query 195117 CAAAGTTTTTACGAACACTTGCATT 195141 ||| || || || || | |||||| Sbjct 3083 CAAGGTCTTCACAAAAATCTGCATT 3107 >seq24355 Length=1900 Score = 109 bits (120), Expect = 1e-18 Identities = 111/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || ||| || || || ||||| || || ||||| || || || || ||||| || ||||| Sbjct 420 CTCACCAGCAAATATGAGTCGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGGATTTT 479 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| ||||||||||| ||||| ||| ||| |||||||| || | ||||||||||| Sbjct 480 CGCCTTCACGTTCTCAATTGTGTCAGAAGCTTCGACTTCAAGTGTGATAGTCTTTCCTGT 539 Query 195117 CAAAGTTTTTACGAACACTTGCATT 195141 || || || ||||| | ||||||| Sbjct 540 CAGGGTCTTCACGAAGATTTGCATT 564 Score = 105 bits (116), Expect = 1e-17 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 194996 GCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTT 195055 ||| |||||| |||||||| || || || ||||| || || || |||||||| || |||| Sbjct 1713 GCTAACCTGCAAAGATAAGGCGCTGCTGATCTGGTGGGATTCCCTCTTTGTCCTGGATTT 1772 Query 195056 TTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTG 195115 | ||| || || || || ||||| || || ||||| ||||| | ||||||||||| Sbjct 1773 TGGCCTTCACATTTTCGATTGTGTCTGATGCCTCGACTTCCAGGGTGATCGTCTTTCCTG 1832 Query 195116 TCAAAGTTTTTACGAACACTTGCATT 195141 ||| ||||| ||||| | |||||| Sbjct 1833 TCAGCGTTTTCACGAAAATCTGCATT 1858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1108568200203585