Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oesophagostomum_20dentatum_20[genbank_20GCA_5F000797555.1_202014-12- 15] 64,255 sequences; 443,017,110 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq26501 96.9 4e-15 seq63590 87.8 2e-12 >seq26501 Length=6857 Score = 96.9 bits (106), Expect = 4e-15 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 48306 ATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCT 48365 ||||| |||||||||||||| ||||| || || | |||| |||||||| || || ||| Sbjct 2580 ATATCTGCATGCCATGGTTCCAAATAGATCGCAAAAGCACCAGGTCGTTTGTTTCCACCT 2639 Query 48366 TGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGAT 48425 ||||| | || | ||||| ||||| || |||| | |||||| || | || |||||| Sbjct 2640 TGATCAACGTAACGTGCAGTGTTGTTGTACACTCGAAGCATTGGAACCAGGCCGTTTGAT 2699 Query 48426 ATACCATTGGT 48436 ||||||| || Sbjct 2700 GTACCATTTGT 2710 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 47310 AGATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTT 47369 ||||| || || |||||||| || || || || || ||||| | ||| || || || Sbjct 992 AGATGTGGGTTCACAATTTGGAAGTCACCCGAAAGCACTCTTCTGCTGTAAATGTTGAAG 1051 Query 47370 GTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCAT 47428 ||||| || || || || || ||||| || | ||||||||| ||||||||||| ||||| Sbjct 1052 GTATAAGGCTCGATGGACTCGTTATTGCCGAGAATTTGAGCTGTTGATGCTGTTGGCAT 1110 >seq63590 Length=3081 Score = 87.8 bits (96), Expect = 2e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 48306 ATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCT 48365 ||||| |||||||||||||| ||||| || || | |||| |||||||| || || ||| Sbjct 503 ATATCTGCATGCCATGGTTCCAAATAGATCGCAAAAGCACCAGGTCGTTTGTTTCCACCT 444 Query 48366 TGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGAT 48425 ||||| | || | ||||| ||||| || || | | ||| || || | ||||| ||| Sbjct 443 TGATCAACGTAACGTGCAGTGTTGTTGTACACGCGAAGCATGGGAACCAAGCCATTCGAT 384 Query 48426 ATACCATTGGT 48436 ||||||| || Sbjct 383 GTACCATTTGT 373 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 47310 AGATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTT 47369 ||||| || || |||||||| || || || || || ||||| | ||| || || || Sbjct 2090 AGATGTGGGTTCACAATTTGGAAGTCACCCGAAAGCACTCTTCTGCTGTAAATGTTGAAG 2031 Query 47370 GTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCAT 47428 ||||| || || || || || ||||| || | ||||||||| ||||||||||| ||||| Sbjct 2030 GTATAAGGCTCGATGGACTCGTTATTGCCGAGAATTTGAGCTGTTGATGCTGTTGGCAT 1972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561657321238200