Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oesophagostomum_20dentatum_20[genbank_20GCA_5F000797555.1_202014-12- 15] 64,255 sequences; 443,017,110 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq58607 100 2e-15 seq61737 95.1 1e-13 seq15521 87.8 1e-11 >seq58607 Length=3306 Score = 100 bits (110), Expect = 2e-15 Identities = 137/190 (72%), Gaps = 6/190 (3%) Strand=Plus/Plus Query 550396 GGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGA 550455 ||| || || || ||||| || || || || || |||||||| |||||||| || || || Sbjct 332 GGACGCTGTCATCACTGTTCCTGCTTACTTCAACGACTCACAGCGTCAAGCCACAAAGGA 391 Query 550456 TGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGC 550515 ||| ||| || | ||| | ||||||||||| || ||||| || || ||||| ||||| Sbjct 392 TGCAGGAGCCATCTCAGGATTGAATGTTCTTCGAATAATCAACGAGCCCACTGCCGCTGC 451 Query 550516 ACTTGCATATGGACTTGATAAACATAATGATCA---AGAACTTAATGTACTCATCTTTGA 550572 | || ||||| || || ||| || | || ||| | ||| || ||||| ||||| Sbjct 452 TATCGCTTATGGTCTCGACAAA---AAGGGCCAAGGAGAGCGTAACGTGCTCATTTTTGA 508 Query 550573 TTGTGGAGGT 550582 | |||||| Sbjct 509 TCTCGGAGGT 518 >seq61737 Length=3671 Score = 95.1 bits (104), Expect = 1e-13 Identities = 109/144 (76%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 563332 TTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTT 563391 || |||||||| || || ||||||||||| || || || ||||| || ||||||||||| Sbjct 3278 TTACCGGCAAAGATGAGCCTTTGCTGATCTGGTGGGATGCCTTCCTTGTCTTGAATTTTG 3337 Query 563392 TGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGT 563450 ||| || |||||| ||||| | | || ||| || |||| || || ||||| Sbjct 3338 GCTTTCACATTCTCAATAGTATCTGAAGCCTCGAC-TTCCAGGGTAATGGTCTTTCCAGT 3396 Query 563451 AAGAGTTTTAACGAAAATTTGCAT 563474 ||| ||||| |||||||||||||| Sbjct 3397 AAGTGTTTTCACGAAAATTTGCAT 3420 >seq15521 Length=3453 Score = 87.8 bits (96), Expect = 1e-11 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 550396 GGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGA 550455 ||| || ||||| ||||| || || | || || ||||| |||||||| || || || || Sbjct 3262 GGACGCCGTAATCACTGTTCCTGCTTTCTTCAACGACTCTCAACGTCAGGCCACAAAGGA 3203 Query 550456 TGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGC 550515 ||| ||| ||| || ||| | ||||||||||| ||| |||| ||||| || |||| || Sbjct 3202 TGCAGGAGTTATGGCAGGATTGAATGTTCTTCGAATTCTCAACGAACCAACCACTGCCGC 3143 Query 550516 ACTTGCATATG 550526 | || |||| Sbjct 3142 TATCGCTTATG 3132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4025897905809950