Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oesophagostomum_20dentatum_20[genbank_20GCA_5F000797555.1_202014-12- 15] 64,255 sequences; 443,017,110 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq63590 105 1e-17 seq26501 105 1e-17 >seq63590 Length=3081 Score = 105 bits (116), Expect = 1e-17 Identities = 143/197 (73%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 212858 CATGTCCTCGTTCCAGAGGCCCCTGGTCT-CCAGGCACTTGACCAGGTGAGGGTTGACTA 212916 ||||||||| | ||| ||| | | || |||| ||| | ||| || ||||| || | Sbjct 2133 CATGTCCTCATCCCAAAGGTTCA-GCTCGACCAGATCCTTCAGCAGATGTGGGTTCACAA 2075 Query 212917 TCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGC 212976 | ||||||||||| || ||||| || || ||||| ||| | || || ||||||||| Sbjct 2074 TTTGGAAGTCACCCGAAAGCACTCTTCTGCTGTAAATGTTGAAGGTATAAGGCTCGATGG 2015 Query 212977 TCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGAC 213036 |||||| || || ||||| || || || ||||| ||||| ||||| || ||||||| Sbjct 2014 ACTCGTTATTGCCGAGAATTTGAGCTGTTGATGCTGTTGGCATTGGAGCGACGAGGAGAC 1955 Query 213037 TGTTCCTCACTCCGTGC 213053 |||| | | ||| ||| Sbjct 1954 TGTTACGTAGTCCATGC 1938 >seq26501 Length=6857 Score = 105 bits (116), Expect = 1e-17 Identities = 143/197 (73%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 212858 CATGTCCTCGTTCCAGAGGCCCCTGGTCT-CCAGGCACTTGACCAGGTGAGGGTTGACTA 212916 ||||||||| | ||| ||| | | || |||| ||| | ||| || ||||| || | Sbjct 949 CATGTCCTCATCCCAAAGGTTCA-GCTCGACCAGATCCTTCAGCAGATGTGGGTTCACAA 1007 Query 212917 TCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGC 212976 | ||||||||||| || ||||| || || ||||| ||| | || || ||||||||| Sbjct 1008 TTTGGAAGTCACCCGAAAGCACTCTTCTGCTGTAAATGTTGAAGGTATAAGGCTCGATGG 1067 Query 212977 TCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGAC 213036 |||||| || || ||||| || || || ||||| ||||| ||||| || ||||||| Sbjct 1068 ACTCGTTATTGCCGAGAATTTGAGCTGTTGATGCTGTTGGCATTGGAGCGACGAGGAGAC 1127 Query 213037 TGTTCCTCACTCCGTGC 213053 |||| | | ||| ||| Sbjct 1128 TGTTACGTAGTCCATGC 1144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 930784604499200