Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oesophagostomum_20dentatum_20[genbank_20GCA_5F000797555.1_202014-12- 15] 64,255 sequences; 443,017,110 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq64047 100 4e-16 seq9594 91.5 2e-13 >seq64047 Length=1018 Score = 100 bits (110), Expect = 4e-16 Identities = 82/100 (82%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 48075 ACCATAAGGAGAACGTGGATAGAAAGGTGTGGTCTCTGTCTGTGGAGTCTCTTGCACCTT 48134 ||| ||||||||||||||||| || || ||||| ||| |||||||| |||| ||||| || Sbjct 300 ACCGTAAGGAGAACGTGGATAAAACGGCGTGGTTTCTCTCTGTGGAATCTCCTGCACTTT 359 Query 48135 ACCATAAAGTTCACTGGTGGATGCTTGATAGATACGAACC 48174 || || |||||| || ||||||||||||| |||||| Sbjct 360 TCCGTAGAGTTCAGAAGTTGATGCTTGATAGAAGCGAACC 399 >seq9594 Length=9307 Score = 91.5 bits (100), Expect = 2e-13 Identities = 80/100 (80%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 48075 ACCATAAGGAGAACGTGGATAGAAAGGTGTGGTCTCTGTCTGTGGAGTCTCTTGCACCTT 48134 ||| || ||||||||||||||||| || ||||| ||| |||||||| |||| ||||| || Sbjct 1409 ACCGTAGGGAGAACGTGGATAGAACGGCGTGGTTTCTCTCTGTGGAATCTCCTGCACTTT 1468 Query 48135 ACCATAAAGTTCACTGGTGGATGCTTGATAGATACGAACC 48174 ||||| || ||| || || |||||||||| || ||| Sbjct 1469 TCCATAGAGCTCAGAAGTAGACGCTTGATAGAAGCGCACC 1508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 664959883216600