Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oesophagostomum_20dentatum_20[genbank_20GCA_5F000797555.1_202014-12- 15] 64,255 sequences; 443,017,110 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq51493 158 1e-32 seq2036 140 4e-27 seq13131 123 3e-22 seq60488 122 1e-21 seq24984 122 1e-21 seq60439 102 1e-15 seq365 102 1e-15 seq103 91.5 2e-12 seq62393 89.7 6e-12 >seq51493 Length=6199 Score = 158 bits (174), Expect = 1e-32 Identities = 165/217 (76%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || || | | ||||||||| |||||||||||||| ||||| | | || Sbjct 2163 GCTTGGCCAGCTCTCCAGGAAGGATCAGGCGGACGGCGGTCTGGATTTCGCGGGAGGAGA 2104 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 |||| ||||||||| ||||||| || || |||||| | ||||||| |||| | Sbjct 2103 TCGTCGAGCGCTTGTTGTAGTGCGCGAGTCGCGACGCCTCGACGGCGATGCGCTCGAAGA 2044 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||| || || |||||||||| |||||||| |||| || | || |||||||| Sbjct 2043 CGTCGTTCACGAAGGAGTTCATGATCGACATCGCCTTGGACGACACTCCGGTGTCGGGGT 1984 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559 |||||||||||||||| ||||||| | |||||| Sbjct 1983 GCACCTGCTTGAGCACGCGGTAGATGTAGACCGAGTA 1947 >seq2036 Length=42145 Score = 140 bits (154), Expect = 4e-27 Identities = 161/217 (74%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || || ||| ||| ||| ||||| || ||||||||||| ||||| | || Sbjct 25288 GCTTGGCGAGCTCTCCGGGCAGGATGAGGCGAACAGCGGTCTGGATTTCGCGGGACGAGA 25229 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 ||||| |||||||| ||||||| || || |||||| | ||||||| |||| | Sbjct 25228 TCGTGGATCGCTTGTTGTAGTGCGCGAGTCGCGAAGCCTCGACGGCGATGCGCTCGAAGA 25169 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||| || ||||||||||||| ||||||| ||| || | || |||||||| Sbjct 25168 CGTCGTTCACGAACGAGTTCATGATGGACATCGCCTTCGAAGACACTCCGGTGTCGGGGT 25109 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559 | |||||||||||||| ||||||| | |||||| Sbjct 25108 GGACCTGCTTGAGCACACGGTAGATGTAGACCGAGTA 25072 Score = 116 bits (128), Expect = 5e-20 Identities = 156/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || || || ||| ||| ||||| || ||||||||||| || || | || Sbjct 33446 GCTTGGCGAGCTCTCCTGGCAGGATGAGGCGAACAGCGGTCTGGATTTCACGGGACGAGA 33387 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 |||| |||||||| ||||||| || || |||||| | ||||||| || | | Sbjct 33386 TCGTTGATCGCTTGTTGTAGTGCGCGAGTCGCGAAGCCTCGACGGCGATGCGCTCAAAGA 33327 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||| || ||||||||||||| ||||| | ||| || | || |||||||| Sbjct 33326 CGTCGTTCACGAACGAGTTCATGATGGACATGGCCTTCGACGACACTCCTGTGTCGGGGT 33267 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559 | |||||||||||||| ||||||| | |||||| Sbjct 33266 GGACCTGCTTGAGCACACGGTAGATGTAGACCGAGTA 33230 >seq13131 Length=4457 Score = 123 bits (136), Expect = 3e-22 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || || || ||| ||||||||| |||||||||||||||||||| | || Sbjct 437 GCTTGGCGAGCTCTCCCGGCAGGATCAGGCGAACGGCGGTCTGGATCTCGCGGGACGAGA 378 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| ||||||| || || ||||| | | | ||||| |||| | Sbjct 377 TGGTCGAGCGCTTGTTGTAGTGCGCGAGTCGCGACGCCTCAGCGGCTATGCGCTCGAAGA 318 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||| || ||||||||||||| |||||||| | ||||| || |||||| | Sbjct 317 CGTCGTTCACGAACGAGTTCATGATCGACATCGCTCTCGAGGAGACTCCGGTGTCGGGAT 258 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 | || ||||| | ||| ||||||| Sbjct 257 GGACTTGCTTCAACACGCGGTAGATG 232 >seq60488 Length=1889 Score = 122 bits (134), Expect = 1e-21 Identities = 157/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || || || ||| ||||||||| |||||||||||||||||||| | || Sbjct 411 GCTTGGCGAGCTCTCCCGGCAGGATCAGGCGAACGGCGGTCTGGATCTCGCGGGACGAGA 352 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| ||||||| || || ||||| | | | ||||| |||| | Sbjct 351 TGGTCGAGCGCTTGTTGTAGTGCGCGAGTCGCGACGCCTCAGCGGCTATGCGCTCGAAGA 292 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||| ||||||||||||||| |||||||| | ||||| || |||||| | Sbjct 291 CGTCGTTCACAAACGAGTTCATGTTCGACATCGCTCTCGAGGAGACTCCGGTGTCGGGAT 232 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559 | || ||||| | ||| ||| ||| | |||||| Sbjct 231 GGACTTGCTTCAACACACGGTAAATGTAGACCGAGTA 195 >seq24984 Length=1824 Score = 122 bits (134), Expect = 1e-21 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTG 1254407 ||||| || || | | |||||||| |||||||||||||| ||||| | |||||| Sbjct 1604 GCCAGCTCTCCCGGTAGAATCAGGCGAACGGCGGTCTGGATTTCGCGGGACGAGATCGTC 1545 Query 1254408 TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCG 1254467 ||||||||| ||||||| || || ||||| | | ||||||| |||| | |||| Sbjct 1544 GAGCGCTTGTTGTAGTGCGCGAGTCGCGACGCCTCAGCGGCGATGCGTTCGAAGACGTCG 1485 Query 1254468 TTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACC 1254527 || || ||||||||||||| |||||||| | | || | || ||| || ||||| Sbjct 1484 TTCACGAACGAGTTCATGATCGACATCGCCCTCGACGACACTCCGGTGTCCGGATGCACT 1425 Query 1254528 TGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559 ||||| ||||| ||||||| | |||||| Sbjct 1424 TGCTTCAGCACGCGGTAGATGTAGACCGAGTA 1393 >seq60439 Length=1915 Score = 102 bits (112), Expect = 1e-15 Identities = 140/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||| || ||||| ||| |||||||| |||||||||||||||||||| | || Sbjct 492 GCTTGGTGAGCTCGCCCGGCAGAATCAGGCGGACGGCGGTCTGGATCTCGCGAGACGAGA 433 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||| ||||| ||||||| || || ||||| | | | ||||| |||| | Sbjct 432 TGGTCGAGCGTTTGTTGCAGTGCGCGAGTCGCGACGCCTCAGCGGCTATGCGCTCGAAGA 373 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||| || ||||| ||||||| |||||||| | ||||| || ||| || | Sbjct 372 CGTCGTTCACGAACGAATTCATGATCGACATCGCTCTCGAGGAGACTCCGGTGTCCGGAT 313 Query 1254523 GCACCTGCTTGAGCAC 1254538 | || ||||| | ||| Sbjct 312 GGACTTGCTTCAACAC 297 >seq365 Length=140457 Score = 102 bits (112), Expect = 1e-15 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 1592106 AGAAGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCA 1592165 |||| |||||||||||||| | ||||| |||||| | || || ||| || Sbjct 30146 AGAAACGCACCGACGACATACCCAGCTGGGATGTTGAGTTTCTGAAGGTTGATCAGGGCA 30205 Query 1592166 CCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTG 1592225 | || || ||| | |||||||| ||||| |||||||| ||||| |||||| || || Sbjct 30206 CTCTGTTCGAGCTTATCCTCGCTGCCAATTACCTCGATATCAAAGGTCTGCTTGACGTTA 30265 Query 1592226 GGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCT 1592285 |||||| | || ||||| ||||| ||||| || |||| |||||||| | || | Sbjct 30266 CCTGCAAGACCGTTGCCAATATGATTAAGGGTAAAACGCCAGAGGAGATTAGGCGCACTT 30325 Query 1592286 TTAACATCAAG 1592296 | ||||||||| Sbjct 30326 TCAACATCAAG 30336 >seq103 Length=247356 Score = 91.5 bits (100), Expect = 2e-12 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 1592106 AGAAGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCA 1592165 |||||||||| ||||| ||| | ||||| ||| || | | || || ||| || Sbjct 105168 AGAAGCGCACTGACGATATCCCAAGCTGGGATGTGGAATTCCTCAAAGTGGATCAGGGCA 105109 Query 1592166 CCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTG 1592225 | || || || | || | |||||||||||||| || |||||| | |||| || | Sbjct 105108 CGCTGTTCGAACTTATTTTGGCCGCCAACTACCTGGATATCAAGGGTTTGCTTGACGTGA 105049 Query 1592226 GGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCT 1592285 ||||| |||| || ||||||||||||||||| | || || || || || || | Sbjct 105048 CTTGCAAAACTGTTGCAAACATGATCAAGGGCAAAACTCCGGAAGAAATTCGACGAACAT 104989 Query 1592286 TTAACATCAAGTACG 1592300 ||||||||||| ||| Sbjct 104988 TTAACATCAAGAACG 104974 >seq62393 Length=1127 Score = 89.7 bits (98), Expect = 6e-12 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 1254438 GCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACCGACATCGAC 1254497 |||||| | ||||||| |||| || |||||| || ||||||||||||| |||||||| | Sbjct 17 GCCTCGACGGCGATGCGCTCGAACACGTCGTTCACGAACGAGTTCATGATCGACATCGCC 76 Query 1254498 TTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAGATGAACGACGAG 1254557 || || | || ||| ||||| |||||||||||||| ||||||| | |||| Sbjct 77 TTCGATGACACTCCTGTGTCCGGGTGGACCTGCTTGAGCACACGGTAGATGTAGACCGAG 136 Query 1254558 TA 1254559 || Sbjct 137 TA 138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6101866133793835