Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oesophagostomum_20dentatum_20[genbank_20GCA_5F000797555.1_202014-12- 15] 64,255 sequences; 443,017,110 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq51493 201 2e-45 seq2036 192 9e-43 seq60488 165 1e-34 seq24984 156 7e-32 seq60439 149 1e-29 seq13131 149 1e-29 seq365 122 1e-21 seq14249 116 6e-20 seq12014 111 2e-18 seq9329 93.3 7e-13 >seq51493 Length=6199 Score = 201 bits (222), Expect = 2e-45 Identities = 188/237 (79%), Gaps = 4/237 (2%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||||||||| || ||||| || ||||||||| ||||||| || || | | Sbjct 2202 TGTACTTGGTGACGGCCTTCGTTCCCTCGGACACGGCGTGCTTGGCCAGCTCTCCAGGAA 2143 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTT--AGT 1485587 ||||||||| |||||||||||||| ||||||| | |||||| ||||||||| ||| Sbjct 2142 GGATCAGGCGGACGGCGGTCTGGATTTCGCGGGAGGAGATCGTCGAGCGCTTGTTGTAGT 2083 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 ||||| ||| | |||||| | ||||||| |||| | |||||| || || ||||| Sbjct 2082 GCGCGAGTCGCGAC--GCCTCGACGGCGATGCGCTCGAAGACGTCGTTCACGAAGGAGTT 2025 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 |||||||||||||| ||| || | || |||||||||||||||||||||||| Sbjct 2024 CATGATCGACATCGCCTTGGACGACACTCCGGTGTCGGGGTGCACCTGCTTGAGCAC 1968 >seq2036 Length=42145 Score = 192 bits (212), Expect = 9e-43 Identities = 186/237 (78%), Gaps = 4/237 (2%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| |||||||||||| |||| || || ||| ||| Sbjct 25327 TGTACTTGGTGACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCGAGCTCTCCGGGCA 25268 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTT--AGT 1485587 ||| ||||| || ||||||||||| ||||||| ||||||| |||||||| ||| Sbjct 25267 GGATGAGGCGAACAGCGGTCTGGATTTCGCGGGACGAGATCGTGGATCGCTTGTTGTAGT 25208 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 ||||| || || |||||| | ||||||| |||| | |||||| || |||||||| Sbjct 25207 GCGCG--AGTCGCGAAGCCTCGACGGCGATGCGCTCGAAGACGTCGTTCACGAACGAGTT 25150 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 |||||| ||||||| || || | || ||||||||| |||||||||||||| Sbjct 25149 CATGATGGACATCGCCTTCGAAGACACTCCGGTGTCGGGGTGGACCTGCTTGAGCAC 25093 Score = 165 bits (182), Expect = 1e-34 Identities = 180/237 (76%), Gaps = 4/237 (2%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| |||||||||||| |||| || || || ||| Sbjct 33485 TGTACTTGGTGACCGCCTTGGTGCCCTCAGAGACGGCGTGCTTGGCGAGCTCTCCTGGCA 33426 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTT--AGT 1485587 ||| ||||| || ||||||||||| || |||| |||||| |||||||| ||| Sbjct 33425 GGATGAGGCGAACAGCGGTCTGGATTTCACGGGACGAGATCGTTGATCGCTTGTTGTAGT 33366 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 ||||| || || |||||| | ||||||| || | | |||||| || |||||||| Sbjct 33365 GCGCG--AGTCGCGAAGCCTCGACGGCGATGCGCTCAAAGACGTCGTTCACGAACGAGTT 33308 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 |||||| ||||| | || || | || ||||||||| |||||||||||||| Sbjct 33307 CATGATGGACATGGCCTTCGACGACACTCCTGTGTCGGGGTGGACCTGCTTGAGCAC 33251 >seq60488 Length=1889 Score = 165 bits (182), Expect = 1e-34 Identities = 194/259 (75%), Gaps = 5/259 (2%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCT-GGCCAGTTCGCCGCGC 1485528 |||||||||| || ||||| || || || ||||||||||| || ||| || || || || Sbjct 451 TGTACTTGGTCACAGCCTTCGTGCCTTCGGAGACGGCGTGGCTTGGCGAGCTCTCCCGGC 392 Query 1485529 ATGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTT--AG 1485586 | ||||||||| |||||||||||||||||||||| ||| || ||||||||| || Sbjct 391 AGGATCAGGCGAACGGCGGTCTGGATCTCGCGGGACGAGATGGTCGAGCGCTTGTTGTAG 332 Query 1485587 TGCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGT 1485646 |||||| ||| | ||||| | | | ||||| |||| | |||||| |||||||||| Sbjct 331 TGCGCGAGTCGCGAC--GCCTCAGCGGCTATGCGCTCGAAGACGTCGTTCACAAACGAGT 274 Query 1485647 TCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCT 1485706 ||||| ||||||||| | | ||||| || |||||| || || ||||| | ||| Sbjct 273 TCATGTTCGACATCGCTCTCGAGGAGACTCCGGTGTCGGGATGGACTTGCTTCAACACAC 214 Query 1485707 TGTAAACAAAGGACGAGTA 1485725 ||||| || |||||| Sbjct 213 GGTAAATGTAGACCGAGTA 195 >seq24984 Length=1824 Score = 156 bits (172), Expect = 7e-32 Identities = 178/237 (75%), Gaps = 4/237 (2%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| || ||||| || ||||| || ||||||||| | ||||| || || | | Sbjct 1648 TGTACTTGGTAACTGCCTTTGTGCCCTCGGAAACGGCGTGCTTCGCCAGCTCTCCCGGTA 1589 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTT--AGT 1485587 |||||||| |||||||||||||| ||||||| |||||| ||||||||| ||| Sbjct 1588 GAATCAGGCGAACGGCGGTCTGGATTTCGCGGGACGAGATCGTCGAGCGCTTGTTGTAGT 1529 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 ||||| ||| | ||||| | | ||||||| |||| | |||||| || |||||||| Sbjct 1528 GCGCGAGTCGCGAC--GCCTCAGCGGCGATGCGTTCGAAGACGTCGTTCACGAACGAGTT 1471 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 |||||||||||||| | || | || ||| || ||||| ||||| ||||| Sbjct 1470 CATGATCGACATCGCCCTCGACGACACTCCGGTGTCCGGATGCACTTGCTTCAGCAC 1414 >seq60439 Length=1915 Score = 149 bits (164), Expect = 1e-29 Identities = 181/245 (74%), Gaps = 4/245 (2%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| || ||||| || || || |||||||||||| ||| || ||||| ||| Sbjct 531 TGTACTTGGTCACAGCCTTCGTGCCTTCGGAGACGGCGTGCTTGGTGAGCTCGCCCGGCA 472 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTT--AGT 1485587 |||||||| |||||||||||||||||||| | ||| || ||| ||||| ||| Sbjct 471 GAATCAGGCGGACGGCGGTCTGGATCTCGCGAGACGAGATGGTCGAGCGTTTGTTGCAGT 412 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 ||||| ||| | ||||| | | | ||||| |||| | |||||| || ||||| || Sbjct 411 GCGCGAGTCGCGAC--GCCTCAGCGGCTATGCGCTCGAAGACGTCGTTCACGAACGAATT 354 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1485707 |||||||||||||| | | ||||| || ||| || || || ||||| | ||| Sbjct 353 CATGATCGACATCGCTCTCGAGGAGACTCCGGTGTCCGGATGGACTTGCTTCAACACGCG 294 Query 1485708 GTAAA 1485712 ||||| Sbjct 293 GTAAA 289 >seq13131 Length=4457 Score = 149 bits (164), Expect = 1e-29 Identities = 169/225 (75%), Gaps = 4/225 (2%) Strand=Plus/Minus Query 1485482 CGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATCAGGCGCA 1485541 || |||| || | || |||||||||||| |||| || || || ||| ||||||||| | Sbjct 464 CGACCTTCGTGTCTTCGGAGACGGCGTGCTTGGCGAGCTCTCCCGGCAGGATCAGGCGAA 405 Query 1485542 CGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTT--AGTGCGCGCCAGGCG 1485599 ||||||||||||||||||||| ||| || ||||||||| |||||||| ||| Sbjct 404 CGGCGGTCTGGATCTCGCGGGACGAGATGGTCGAGCGCTTGTTGTAGTGCGCGAGTCGCG 345 Query 1485600 GCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACAT 1485659 | ||||| | | | ||||| |||| | |||||| || |||||||||||||||||||| Sbjct 344 AC--GCCTCAGCGGCTATGCGCTCGAAGACGTCGTTCACGAACGAGTTCATGATCGACAT 287 Query 1485660 CGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 || | | ||||| || |||||| || || ||||| | ||| Sbjct 286 CGCTCTCGAGGAGACTCCGGTGTCGGGATGGACTTGCTTCAACAC 242 >seq365 Length=140457 Score = 122 bits (134), Expect = 1e-21 Identities = 142/190 (75%), Gaps = 4/190 (2%) Strand=Plus/Minus Query 1485472 TACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATG 1485531 |||||||| || ||||| ||||| || ||||| |||||| |||| || || ||| ||| Sbjct 6346 TACTTGGTAACAGCCTTCGTACCTTCAGAGACAGCGTGCTTGGCAAGCTCACCGGGCAGA 6287 Query 1485532 ATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTT--AGTGC 1485589 |||||||| || || ||||| || ||||| | ||| ||| |||||||| |||| Sbjct 6286 ATCAGGCGAACAGCTGTCTGAATTTCGCGAGACGAGATGGTGGAACGCTTGTTGTAGTGG 6227 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||| ||||| || || | | |||| || |||| | |||||| || |||||||||| Sbjct 6226 GCG--AGGCGTGACGCTTCAGCGGCGATACGTTCGAAGACGTCGTTCACGAACGAGTTCA 6169 Query 1485650 TGATCGACAT 1485659 |||| ||||| Sbjct 6168 TGATTGACAT 6159 >seq14249 Length=3826 Score = 116 bits (128), Expect = 6e-20 Identities = 169/236 (72%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||| || || |||||||| || || || ||||||||| |||| || || ||| ||| Sbjct 653 TGTACTTAGTCACAGCCTTGGTGCCTTCAGAAACGGCGTGCTTGGCGAGCTCTCCGGGCA 594 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 ||||| || || |||||||||||||| |||| ||| || | |||||| || | Sbjct 593 AAATCAGACGAACCGCGGTCTGGATCTCACGGGACGAGATGGTCGACCTCTTGTT-GTAC 535 Query 1485590 -GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 |||| || || || || | | || || |||| | ||||||||| || |||||| Sbjct 534 TGCGCGAGACGAGACGCTTCAGCAGCAATACGCTCGAAAACGTCGTTGACGAAGGAGTTC 475 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 ||||| ||||| | | | |||| || |||||||| |||||||| || || Sbjct 474 ATGATGGACATGGCTCGGGACGAGACTCCGGTATCGGGGTGGACCTGCTTCAGGAC 419 >seq12014 Length=4783 Score = 111 bits (122), Expect = 2e-18 Identities = 85/101 (84%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||| ||||| ||||| |||||||| || ||||||||||| | ||| || || |||| Sbjct 3016 TGTACTTAGTGACTGCCTTCGTACCCTCGGAAACGGCGTGCCTTGGCAGCTCTCCCCGCA 2957 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATC 1485570 |||||||| |||||||||||||||||||||| ||||| Sbjct 2956 GAATCAGGCGAACGGCGGTCTGGATCTCGCGGGACGCGATC 2916 >seq9329 Length=7243 Score = 93.3 bits (102), Expect = 7e-13 Identities = 137/192 (71%), Gaps = 4/192 (2%) Strand=Plus/Minus Query 1485472 TACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATG 1485531 || || ||||| ||||| || || || || || || || | ||||| || || || Sbjct 2337 TATTTAGTGACAGCCTTCGTGCCTTCAGAAACCGCATGTTTAGCCAGCTCTCCCGACAAC 2278 Query 1485532 ATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTT--AGTGC 1485589 | |||||| ||||||||||| | |||||| | | ||| ||||||| ||||| Sbjct 2277 ACCAGGCGGACGGCGGTCTGAACCTCGCGAGACGTCAGCGTCGAATGCTTGTTGTAGTGC 2218 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||| ||| | ||||| | | ||||||| |||| | |||||| || |||||||||| Sbjct 2217 GCGAGTCGCGAC--GCCTCAGCGGCGATGCGTTCGAAAAGGTCGTTCACGAACGAGTTCA 2160 Query 1485650 TGATCGACATCG 1485661 |||| ||||||| Sbjct 2159 TGATGGACATCG 2148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7909411302582945