Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oesophagostomum_20dentatum_20[genbank_20GCA_5F000797555.1_202014-12- 15] 64,255 sequences; 443,017,110 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq58607 161 7e-34 seq6330 91.5 1e-12 >seq58607 Length=3306 Score = 161 bits (178), Expect = 7e-34 Identities = 662/1028 (64%), Gaps = 17/1028 (2%) Strand=Plus/Minus Query 281456 AAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAA 281515 |||| |||| | || ||||| || || || || | | ||||||||||| || | Sbjct 1352 AAATAAAATCTTACCTCAATCTGTGGAACACCACGAGGTGCAGGTGGGATTCCGGATAGC 1293 Query 281516 TTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGG 281575 | ||| | || || || || || || || | | || || ||||| || | ||| Sbjct 1292 TCGAATTTCCCAAGCAGGTTGTTGTCCTTGGTCATTGCACGCTCTCCCTCAAACACCTGG 1233 Query 281576 AT-AGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTGGATTTT-TTACAAG 281633 || |||| | ||| || || || || || || || || ||||| | | ||| | Sbjct 1232 ATGAGTA-CACCAGGCTGGTTGTCGGAGTAGGTGGTGAAGG-TCTGGCTGGTCTTAGTCG 1175 Query 281634 GAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAGCTGTTTCTAAACCAA 281693 | || || || || || | ||| | | |||||| | ||| ||||| || || | ||||| Sbjct 1174 GGATGGTGGTATTCCTCTTAATCAGAGCGGTCATCACACCTCCAGCGGTCTCAATACCAA 1115 Query 281694 GAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAA 281753 | || || |||| ||| |||| || | | | ||| | | | ||| | | ||| Sbjct 1114 GTGACAGGGGAGCGACGTCAAGAAGCAGCAGGTCTTGCACTGTCTCAGACTTGTCACCGG 1055 Query 281754 CAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTC-ATCAGGATTAACAGTT 281812 ||| ||||| ||||| | ||||||||| || || || || || ||| || || | | Sbjct 1054 AAAGGATAGCAGCTTGCACAGCAGCACCGTAGGCGACGGCCTCGATCGGGGTTGATGGAC 995 Query 281813 TCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTT-ACCTTAGGAATACG 281871 | || |||| || ||| ||| | | ||||| || | ||| ||||| || || || Sbjct 994 TTGTTCAGTTCCTTGCCAGAGAAGAGGTCGGAAAGCAGCT-TCTGGACCTTGGGGATTCG 936 Query 281872 AGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAA 281931 || |||||||| || | || || || || | ||| || |||| || | ||| Sbjct 935 AGTGGATCCTCCGACGAGGACGATGTCGTGGATCTGGCTCTTGTCCATCTTGGCGTCCCT 876 Query 281932 TAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAA 281991 | || || ||||| || | | || || | || | |||||||| ||||| Sbjct 875 CAGCGACTTCTCGACGGGGTCCATGGTGGATCGGAAGAGATCAGCGCAAAGTTCCTCGAA 816 Query 281992 TTTAGCTCTAGTAAGAGTGACATTATAA-TCAATTCCTTCGAACAAAGAATCAACTTCAA 282050 | || | ||||| || | || || || || || ||||| | || || | ||| | Sbjct 815 TCGGGCACGAGTAAT-GTTAGTGTAGAAGTCGATACCCTCGAAGAGCGAGTCGATTTCGA 757 Query 282051 TCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTC 282110 ||| || |||| |||||| || || | || || || ||||| || || || | |||| Sbjct 756 TCGAAGCCTGAGACGAAGACGACAGCGTGCGCTTGGCGCGTTCGCAAGCAGTACGAAGTC 697 Query 282111 TTCGTAAGGCTTTTGC-TGATTGATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCA 282169 ||| | || | | | || || | ||| | || | ||| | |||||| || | Sbjct 696 GTCGGAGAGCACGAGGGTTAGTG-TTGAGATCCTTCTTGTGTTTGCGCTTGAATTCGGCG 638 Query 282170 ACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGAC 282229 || | | || | || || || || ||||| ||||| | | |||| || | Sbjct 637 ACGAAGTGGTTGACCATTCGGTTGTCGAAGTCTTCTCCTCCAAGGTGGGTATCACCAGCA 578 Query 282230 GTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCA 282289 || | | |||| ||| | |||||| || | | || | | ||||| ||| ||| Sbjct 577 GTTGACTTCACTTCGAAGATTCCATCCTCGATGGTCAGGATGGACACATCGAAGGTACCA 518 Query 282290 CCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGG---TTTTTATCAAGACCA 282346 || || | ||||||||| || || || ||| ||||| ||||| || |||||| Sbjct 517 CCTCCGAGATCAAAAATGAGCACGTTACGCTCTC---CTTGGCCCTTTTTGTCGAGACCA 461 Query 282347 TACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATT 282406 || || | |||||| ||||| || || || || |||| | |||||| | || | || Sbjct 460 TAAGCGATAGCAGCGGCAGTGGGCTCGTTGATTATTCGAAGAACATTCAATCCTGAGATG 401 Query 282407 CTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATA 282466 ||||||||| || |||||||| | ||||| ||||| || || ||||||||||| || Sbjct 400 GCTCCTGCATCCTTTGTGGCTTGACGCTGTGAGTCGTTGAAGTAAGCAGGAACAGTGATG 341 Query 282467 ACGGCATC 282474 || || || Sbjct 340 ACAGCGTC 333 >seq6330 Length=14943 Score = 91.5 bits (100), Expect = 1e-12 Identities = 116/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 || || |||||||| || || | || ||||| || || || || || |||| | || Sbjct 6578 TTCTTGTCAAGACCGTAGGCGATGGCGGCAGCTGTCGGCTCGTTGATGATTCGGACGACG 6519 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || | ||||| || |||| ||||| ||||||||||| | || | |||||| || || Sbjct 6518 TTCAATCCAGCGATGGTTCCGGCATCCTTAGTGGCTTGACGCTGGGCATCGTTGAAGTAG 6459 Query 282452 GCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAA 282491 ||||| || || | |||||| | ||||||| ||||||| Sbjct 6458 GCAGGGACGGTGACAACGGCGTGCTTTACTTCCTTTCCAA 6419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3737475751041630