Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oesophagostomum_20dentatum_20[genbank_20GCA_5F000797555.1_202014-12- 15] 64,255 sequences; 443,017,110 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq51493 174 2e-37 seq2036 167 3e-35 seq24984 143 4e-28 seq13131 143 4e-28 seq60488 141 1e-27 seq60439 134 2e-25 seq14249 113 6e-19 seq365 105 1e-16 seq9329 89.7 7e-12 >seq51493 Length=6199 Score = 174 bits (192), Expect = 2e-37 Identities = 186/244 (76%), Gaps = 10/244 (4%) Strand=Plus/Plus Query 724899 TACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCC 724958 |||||| || |||||| ||||||||||||||||||||| |||| | | | ||| Sbjct 1947 TACTCGGTCTACATCTACCGCGTGCTCAAGCAGGTGCACCCCGACACCGGAGTGTCGTCC 2006 Query 724959 TCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGC 725018 ||| | ||||||||||||||||| || || |||||| | |||| ||||||| | Sbjct 2007 ------AAGGCGATGTCGATCATGAACTCCTTCGTGAACGACGTCTTCGAGCGCATCGCC 2060 Query 725019 ACCGAGGCCGGTCGC--CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGA 725076 |||||| ||||| || |||| || |||||||||| |||||| | | ||||| | Sbjct 2061 GTCGAGGC--GTCGCGACTCGCGCACTACAACAAGCGCTCGACGATCTCCTCCCGCGAAA 2118 Query 725077 TCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGG 725136 ||||||||||||| ||||||||| | | || || ||||||| ||||||||| ||||||| Sbjct 2119 TCCAGACCGCCGTCCGCCTGATCCTTCCTGGAGAGCTGGCCAAGCACGCCGTGTCCGAGG 2178 Query 725137 GCAC 725140 | || Sbjct 2179 GAAC 2182 >seq2036 Length=42145 Score = 167 bits (184), Expect = 3e-35 Identities = 183/244 (75%), Gaps = 6/244 (2%) Strand=Plus/Plus Query 724899 TACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCC 724958 |||||| || |||||| |||||||||||||| |||||| |||| | | | || Sbjct 25072 TACTCGGTCTACATCTACCGTGTGCTCAAGCAGGTCCACCCCGACACCGGAGTGTCTTCG 25131 Query 724959 TCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGC 725018 ||| | ||||| |||||||||||||| || |||||| | |||| ||||||| | Sbjct 25132 ------AAGGCGATGTCCATCATGAACTCGTTCGTGAACGACGTCTTCGAGCGCATCGCC 25185 Query 725019 ACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATC 725078 |||||| || || |||| || ||||||||| ||||||| | ||||| ||| Sbjct 25186 GTCGAGGCTTCGCGACTCGCGCACTACAACAAGCGATCCACGATCTCGTCCCGCGAAATC 25245 Query 725079 CAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGC 725138 |||||||| || ||||| ||| ||| ||| || || |||| ||||||||||||||||||| Sbjct 25246 CAGACCGCTGTTCGCCTCATCCTGCCCGGAGAGCTCGCCAAGCACGCCGTCTCCGAGGGC 25305 Query 725139 ACCA 725142 |||| Sbjct 25306 ACCA 25309 Score = 143 bits (158), Expect = 4e-28 Identities = 178/244 (73%), Gaps = 6/244 (2%) Strand=Plus/Plus Query 724899 TACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCC 724958 |||||| || |||||| |||||||||||||| |||||| || | | | | || Sbjct 33230 TACTCGGTCTACATCTACCGTGTGCTCAAGCAGGTCCACCCCGACACAGGAGTGTCGTCG 33289 Query 724959 TCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGC 725018 ||| ||||||| |||||||||||||| || |||||| | | || ||||||| | Sbjct 33290 ------AAGGCCATGTCCATCATGAACTCGTTCGTGAACGACGTCTTTGAGCGCATCGCC 33343 Query 725019 ACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATC 725078 |||||| || || |||| || ||||||||| |||||| | || || ||| Sbjct 33344 GTCGAGGCTTCGCGACTCGCGCACTACAACAAGCGATCAACGATCTCGTCCCGTGAAATC 33403 Query 725079 CAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGC 725138 |||||||| || ||||| ||| ||| || || || |||| |||||||||||| |||||| Sbjct 33404 CAGACCGCTGTTCGCCTCATCCTGCCAGGAGAGCTCGCCAAGCACGCCGTCTCTGAGGGC 33463 Query 725139 ACCA 725142 |||| Sbjct 33464 ACCA 33467 >seq24984 Length=1824 Score = 143 bits (158), Expect = 4e-28 Identities = 136/172 (79%), Gaps = 4/172 (2%) Strand=Plus/Plus Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 |||||||||||||||||||| || |||||| | |||| ||||||| | | ||||| || Sbjct 1459 ATGTCGATCATGAACTCGTTCGTGAACGACGTCTTCGAACGCATCGCCGCTGAGGC--GT 1516 Query 725031 CGC--CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCG 725088 ||| || |||| || |||||||||| |||||| | ||||| ||||||||||||| Sbjct 1517 CGCGACTCGCGCACTACAACAAGCGCTCGACGATCTCGTCCCGCGAAATCCAGACCGCCG 1576 Query 725089 TGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 | |||||||| | | || || ||||| | ||||||||| ||||||||||| Sbjct 1577 TTCGCCTGATTCTACCGGGAGAGCTGGCGAAGCACGCCGTTTCCGAGGGCAC 1628 >seq13131 Length=4457 Score = 143 bits (158), Expect = 4e-28 Identities = 136/172 (79%), Gaps = 4/172 (2%) Strand=Plus/Plus Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 |||||||||||||||||||| || |||||| | |||| ||||| | | | ||||| || Sbjct 287 ATGTCGATCATGAACTCGTTCGTGAACGACGTCTTCGAGCGCATAGCCGCTGAGGC--GT 344 Query 725031 CGC--CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCG 725088 ||| || |||| || |||||||||| || ||| | ||||||||||||||||||| Sbjct 345 CGCGACTCGCGCACTACAACAAGCGCTCGACCATCTCGTCCCGCGAGATCCAGACCGCCG 404 Query 725089 TGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 | ||||||||| ||| || || || |||| ||||||||||||||| | ||| Sbjct 405 TTCGCCTGATCCTGCCGGGAGAGCTCGCCAAGCACGCCGTCTCCGAAGACAC 456 >seq60488 Length=1889 Score = 141 bits (156), Expect = 1e-27 Identities = 137/173 (79%), Gaps = 5/173 (3%) Strand=Plus/Plus Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||||| ||||||||||||||| |||||| | |||| ||||| | | | ||||| || Sbjct 261 ATGTCGAACATGAACTCGTTTGTGAACGACGTCTTCGAGCGCATAGCCGCTGAGGC--GT 318 Query 725031 CGC--CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCG 725088 ||| || |||| || |||||||||| || ||| | ||||||||||||||||||| Sbjct 319 CGCGACTCGCGCACTACAACAAGCGCTCGACCATCTCGTCCCGCGAGATCCAGACCGCCG 378 Query 725089 TGCGCCTGATCATGCGCGGCGAACTGGCC-AGGCACGCCGTCTCCGAGGGCAC 725140 | ||||||||| ||| || || || ||| || |||||||||||||| ||||| Sbjct 379 TTCGCCTGATCCTGCCGGGAGAGCTCGCCAAGCCACGCCGTCTCCGAAGGCAC 431 >seq60439 Length=1915 Score = 134 bits (148), Expect = 2e-25 Identities = 134/172 (78%), Gaps = 4/172 (2%) Strand=Plus/Plus Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 |||||||||||||| ||||| || |||||| | |||| ||||| | | | ||||| || Sbjct 342 ATGTCGATCATGAATTCGTTCGTGAACGACGTCTTCGAGCGCATAGCCGCTGAGGC--GT 399 Query 725031 CGC--CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCG 725088 ||| || |||| || |||||| ||| || ||| | ||||||||||||||||||| Sbjct 400 CGCGACTCGCGCACTGCAACAAACGCTCGACCATCTCGTCTCGCGAGATCCAGACCGCCG 459 Query 725089 TGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 | |||||||| ||| ||||| || ||| ||||||||||||||| ||||| Sbjct 460 TCCGCCTGATTCTGCCGGGCGAGCTCACCAAGCACGCCGTCTCCGAAGGCAC 511 >seq14249 Length=3826 Score = 113 bits (124), Expect = 6e-19 Identities = 174/244 (71%), Gaps = 6/244 (2%) Strand=Plus/Plus Query 724899 TACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCC 724958 |||||| || |||||| || || |||||||| |||||| |||| | | | || Sbjct 398 TACTCGGTCTACATCTACCGCGTCCTGAAGCAGGTCCACCCCGATACCG--GAGTC-TCG 454 Query 724959 TCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGC 725018 ||| | || ||||||| ||||||||||| || ||||||||| | |||| || || | Sbjct 455 TCC--CGAG-CCATGTCCATCATGAACTCCTTCGTCAACGACGTTTTCGAGCGTATTGCT 511 Query 725019 ACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATC 725078 | || || ||| || |||| | ||||||| | || ||| | || |||||| Sbjct 512 GCTGAAGCGTCTCGTCTCGCGCAGTACAACAAGAGGTCGACCATCTCGTCCCGTGAGATC 571 Query 725079 CAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGC 725138 |||||||| || || ||||| ||| ||| || || |||| ||||||||| || || ||| Sbjct 572 CAGACCGCGGTTCGTCTGATTTTGCCCGGAGAGCTCGCCAAGCACGCCGTTTCTGAAGGC 631 Query 725139 ACCA 725142 |||| Sbjct 632 ACCA 635 >seq365 Length=140457 Score = 105 bits (116), Expect = 1e-16 Identities = 129/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 724965 AAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAG 725024 ||| | ||||| |||||||||||||| || |||||| | |||| || |||| | | || Sbjct 6153 AAGGCAATGTCAATCATGAACTCGTTCGTGAACGACGTCTTCGAACGTATCGCCGCTGAA 6212 Query 725025 GCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACC 725084 || ||||| || | || ||||||||| ||| ||| | ||||| || ||||| Sbjct 6213 GCGTCACGCCTCGCCCACTACAACAAGCGTTCCACCATCTCGTCTCGCGAAATTCAGACA 6272 Query 725085 GCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 || || |||||||| ||| ||| || || |||| |||||| ||||| || || || Sbjct 6273 GCTGTTCGCCTGATTCTGCCCGGTGAGCTTGCCAAGCACGCTGTCTCTGAAGGTAC 6328 >seq9329 Length=7243 Score = 89.7 bits (98), Expect = 7e-12 Identities = 124/172 (72%), Gaps = 4/172 (2%) Strand=Plus/Plus Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| |||||||||||||| || |||||| | |||| ||||||| | | ||||| || Sbjct 2150 ATGTCCATCATGAACTCGTTCGTGAACGACCTTTTCGAACGCATCGCCGCTGAGGC--GT 2207 Query 725031 CGC--CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCG 725088 ||| || |||| || |||||||| ||| | | |||||| | |||||||||| Sbjct 2208 CGCGACTCGCGCACTACAACAAGCATTCGACGCTGACGTCTCGCGAGGTTCAGACCGCCG 2267 Query 725089 TGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 | |||||| | || || || ||||| | || || || || || ||||| Sbjct 2268 TCCGCCTGGTGTTGTCGGGAGAGCTGGCTAAACATGCGGTTTCTGAAGGCAC 2319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7171613687149310