Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oesophagostomum_20dentatum_20[genbank_20GCA_5F000797555.1_202014-12- 15] 64,255 sequences; 443,017,110 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq63590 93.3 6e-14 seq26501 93.3 6e-14 seq389 89.7 7e-13 >seq63590 Length=3081 Score = 93.3 bits (102), Expect = 6e-14 Identities = 104/139 (75%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 69689 ACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTAT 69748 |||| | ||||| | |||||||||||| | ||| ||||| | | || |||||||| | Sbjct 511 ACTCAAAGATATCTGCATGCCATGGTTCCAAATAGATCGCAAAAGCACCAGGTCGTTTGT 452 Query 69749 TTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATAC 69808 |||| || ||||| | ||| | |||||||| || || || | ||||| |||| | | Sbjct 451 TTCCACCTTGATCAACGTAACGTGCAGTGTTGTTGTACACGCGAAGCATGGGAACCAAGC 392 Query 69809 CATTAGATTTACCATTTGT 69827 |||| ||| |||||||||| Sbjct 391 CATTCGATGTACCATTTGT 373 Score = 91.5 bits (100), Expect = 2e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 68698 AGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTA 68757 || ||||| || || || ||||| || || || || | |||||| | ||||||| || Sbjct 2093 AGCAGATGTGGGTTCACAATTTGGAAGTCACCCGAAAGCACTCTTCTGCTGTAAATGTTG 2034 Query 68758 CTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGC 68817 |||||| || || | || || ||||| || ||||||||||| |||||||| |||||| Sbjct 2033 AAGGTATAAGGCTCGATGGACTCGTTATTGCCGAGAATTTGAGCTGTTGATGCTGTTGGC 1974 Query 68818 ATAGGTGCCACCAATAAACTATTTCTAAGACCATG 68852 || || || || | | ||| || | || ||||| Sbjct 1973 ATTGGAGCGACGAGGAGACTGTTACGTAGTCCATG 1939 >seq26501 Length=6857 Score = 93.3 bits (102), Expect = 6e-14 Identities = 104/139 (75%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 69689 ACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTAT 69748 |||| | ||||| | |||||||||||| | ||| ||||| | | || |||||||| | Sbjct 2572 ACTCAAAGATATCTGCATGCCATGGTTCCAAATAGATCGCAAAAGCACCAGGTCGTTTGT 2631 Query 69749 TTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATAC 69808 |||| || ||||| | ||| | |||||||| || || |||| ||||| |||| | | Sbjct 2632 TTCCACCTTGATCAACGTAACGTGCAGTGTTGTTGTACACTCGAAGCATTGGAACCAGGC 2691 Query 69809 CATTAGATTTACCATTTGT 69827 | || ||| |||||||||| Sbjct 2692 CGTTTGATGTACCATTTGT 2710 Score = 91.5 bits (100), Expect = 2e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 68698 AGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTA 68757 || ||||| || || || ||||| || || || || | |||||| | ||||||| || Sbjct 989 AGCAGATGTGGGTTCACAATTTGGAAGTCACCCGAAAGCACTCTTCTGCTGTAAATGTTG 1048 Query 68758 CTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGC 68817 |||||| || || | || || ||||| || ||||||||||| |||||||| |||||| Sbjct 1049 AAGGTATAAGGCTCGATGGACTCGTTATTGCCGAGAATTTGAGCTGTTGATGCTGTTGGC 1108 Query 68818 ATAGGTGCCACCAATAAACTATTTCTAAGACCATG 68852 || || || || | | ||| || | || ||||| Sbjct 1109 ATTGGAGCGACGAGGAGACTGTTACGTAGTCCATG 1143 >seq389 Length=124733 Score = 89.7 bits (98), Expect = 7e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 39878 TCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCC 39937 ||| ||| ||||| || ||||| |||||||||||| ||||||| ||||||||||| Sbjct 57138 TCTCTAATGTATGTTTCAATTAATTTACTATACATTTCCGAATGGACATTTTCAATCGCA 57197 Query 39938 ATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTC 39981 ||||| || |||||||| | | ||||| | |||||| ||||| Sbjct 57198 ATCTGGAAGCCGTAAAAGAAGCGCGCTTCTGGAATTTGCACCTC 57241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686357083438200