Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oesophagostomum_20dentatum_20[genbank_20GCA_5F000797555.1_202014-12- 15] 64,255 sequences; 443,017,110 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq58607 176 1e-38 seq159 123 8e-23 seq24355 114 4e-20 seq15521 98.7 3e-15 seq61737 96.9 1e-14 seq6330 95.1 4e-14 seq64043 84.2 7e-11 >seq58607 Length=3306 Score = 176 bits (194), Expect = 1e-38 Identities = 647/1011 (64%), Gaps = 7/1011 (1%) Strand=Plus/Plus Query 349607 GATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGAT 349666 || ||||| || ||||| || || || || || || | |||||| || ||||| ||| Sbjct 333 GACGCTGTCATCACTGTTCCTGCTTACTTCAACGACTCACAGCGTCAAGCCACAAAGGAT 392 Query 349667 GCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCA 349726 || || ||| | || || |||||||| |||| || || || |||||||| || || Sbjct 393 GCAGGAGCCATCTCAGGATTGAATGTTCTTCGAATAATCAACGAGCCCACTGCCGCTGCT 452 Query 349727 ATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTA---TTCTTATTTTTGAT 349783 || || ||||| || || |||| | | ||||| | | || | || ||||||||| Sbjct 453 ATCGCTTATGGTCTCGACAAAAAGGG---CCAAGGAGAGCGTAACGTGCTCATTTTTGAT 509 Query 349784 TTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTT 349843 | || |||||||| || ||||| || | || || | || || ||||| || ||||| Sbjct 510 CTCGGAGGTGGTACCTTCGATGTGTCCATCCTGACCATCGAGGATGGAATCTTCGAAGTG 569 Query 349844 AAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCG 349903 || |||||||||||||||| || ||||| |||||||| || || || || | || Sbjct 570 AAGTCAACTGCTGGTGATACCCACCTTGGAGGAGAAGACTTCGACAACCGAATGGTCAAC 629 Query 349904 CATTTTGTTAAAGAATTTAAGCGTCAAGCTAAAATTGATATTGGAGATAATCCTAGAGCA 349963 || || || ||||| ||||| || || | ||| | ||| ||| | || Sbjct 630 CACTTCGTCGCCGAATTCAAGCGCAAACACAAGAAGGATCTCAACACTAACCCTCGTGCT 689 Query 349964 ATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAA 350023 | || || || | ||||| || ||||| || ||||| | | || ||| | | || Sbjct 690 CTCCGACGACTTCGTACTGCTTGCGAACGCGCCAAGCGCACGCTGTCGTCTTCGTCTCAG 749 Query 350024 ACCTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGT 350083 | || || ||||| || || || || || | || |||| | ||||| ||| Sbjct 750 GCTTCGATCGAAATCGACTCGCTCTTCGAGGGTATCGACTTCTACACTAACATTACTCGT 809 Query 350084 GCTCGGTTTGAAGAATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAA 350143 || || || || ||| | || ||||| || || | || ||||| || || || || Sbjct 810 GCCCGATTCGAGGAACTTTGCGCTGATCTCTTCCGATCCACCATGGACCCCGTCGAGAAG 869 Query 350144 GTATTAAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGT 350203 | | || || || ||| ||| | ||||| | || | || | || || || Sbjct 870 TCGCTGAGGGACGCCAAGATGGACAAGAGCCAGATCCACGACATCGTCCTCGTCGGAGGA 929 Query 350204 TCTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCT 350263 || || || || || || || || || | || || || | || |||||| |||| Sbjct 930 TCCACTCGAATCCCCAAGGTCCAGAAGCTGCTTTCCGACCTCTTCTCTGGCAAGGAACTG 989 Query 350264 TCTAGATCAATTAATCCAGAT-GAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTAT 350322 | || || || || ||| || || || || || ||||||||||| || || |||| Sbjct 990 AACAAGTCCATCAACCCCGATCGAGGCCGTCGCCTACGGTGCTGCTGTGCAAGCTGCTAT 1049 Query 350323 TTTATCTGGAAATAAGAGTTCTAAAATTGATGATCTATTACTACTAGATGTAACTCCACT 350382 | || || | ||| | | | | | || || | || || || || |||| || Sbjct 1050 CCTTTCCGGTGACAAGTCTGAGACAGTGCAAGACCTGCTGCTTCTTGACGTCGCTCCCCT 1109 Query 350383 TTCGCTTGGATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATAGTAC 350442 || ||||| | || || |||| | || ||||| | ||| ||| || |||| || Sbjct 1110 GTCACTTGGTATTGAGACCGCTGGAGGTGTGATGACCGCTCTGATTAAGAGGAATACCAC 1169 Query 350443 TGTACCTACAAAAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCGGTAAC 350502 | || || || | ||| || || | || | | || || ||||| | ||| Sbjct 1170 CATCCCGACTAAGACCAGCCAGACCTTCACCACCTACTCCGACAACCAGCCTGGTGTACT 1229 Query 350503 AATTCAAGTATTTGAAGGTGAACGTGCTCGCACTAAAGATAATAATAAACTTGGAGAATT 350562 || || || ||||| || || ||||| || || || || || ||||| |||| Sbjct 1230 CATCCAGGTGTTTGAGGGAGAGCGTGCAATGACCAAGGACAACAACCTGCTTGGGAAATT 1289 Query 350563 TACCCTAAGTGAAATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAAGT 350613 ||| | ||| ||||| ||| | || ||||| |||||||| || Sbjct 1290 CGAGCTATCCGGAATCCCACCTGCACCTCGTGGTGTTCCACAGATTGAGGT 1340 >seq159 Length=218524 Score = 123 bits (136), Expect = 8e-23 Identities = 112/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 || || || || ||||| |||||||| ||||||||||| ||||| ||||| |||||||| Sbjct 175903 CCTGCGAAAATCAGACGCTGCTGATCTGGAGGAATTCCCTCTTTGTCCTGGATTTTAGCC 175844 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 || ||||| || || | || || | |||||| ||| | |||| ||||||||| || || Sbjct 175843 TTGACATTCTCGATGGTGTCTGACGCTTCAACCTCAGGGGTAATTGTCTTTCCAGTAAGC 175784 Query 140718 GTTTTTACAAAAATCTGCATT 140738 ||||| || ||||| |||||| Sbjct 175783 GTTTTAACGAAAATTTGCATT 175763 >seq24355 Length=1900 Score = 114 bits (126), Expect = 4e-20 Identities = 110/141 (78%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 |||||||| || |||||||||||||| || || || || || ||||||||||| || || Sbjct 122 CCAGCAAAAATAAGACGTTGCTGATCCGGTGGGATGCCCTCCTTATCCTGAATCTTCGCC 181 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 || ||||| || || | ||| || | ||| ||||| || || | ||||||||||| || Sbjct 182 TTCACATTCTCGATAGTATCGGAAGCTTCGACTTCGAGGGTGATCGTCTTTCCGGTCAGG 241 Query 140718 GTTTTTACAAAAATCTGCATT 140738 || || || || ||||||||| Sbjct 242 GTCTTCACGAAGATCTGCATT 262 Score = 111 bits (122), Expect = 5e-19 Identities = 109/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 || |||||||| || || |||||||| || || ||||| ||||| ||||| ||||| || Sbjct 1718 CCTGCAAAGATAAGGCGCTGCTGATCTGGTGGGATTCCCTCTTTGTCCTGGATTTTGGCC 1777 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 || ||||| || || | || |||| || ||||| || || | |||||||| || || Sbjct 1778 TTCACATTTTCGATTGTGTCTGATGCCTCGACTTCCAGGGTGATCGTCTTTCCTGTCAGC 1837 Query 140718 GTTTTTACAAAAATCTGCATT 140738 ||||| || |||||||||||| Sbjct 1838 GTTTTCACGAAAATCTGCATT 1858 Score = 105 bits (116), Expect = 2e-17 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 |||||||| || || || |||||||| || || ||||| || || ||||| ||||| || Sbjct 424 CCAGCAAATATGAGTCGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGGATTTTCGCC 483 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 || || || ||||| | ||||| | ||| ||||||||||| | |||||||| || || Sbjct 484 TTCACGTTCTCAATTGTGTCAGAAGCTTCGACTTCAAGTGTGATAGTCTTTCCTGTCAGG 543 Query 140718 GTTTTTACAAAAATCTGCATT 140738 || || || || || |||||| Sbjct 544 GTCTTCACGAAGATTTGCATT 564 >seq15521 Length=3453 Score = 98.7 bits (108), Expect = 3e-15 Identities = 632/1011 (63%), Gaps = 7/1011 (1%) Strand=Plus/Minus Query 349607 GATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGAT 349666 || || || || ||||| || || | || || || | || ||| || ||||| ||| Sbjct 3261 GACGCCGTAATCACTGTTCCTGCTTTCTTCAACGACTCTCAACGTCAGGCCACAAAGGAT 3202 Query 349667 GCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCA 349726 || || || || || || |||||||| |||| | || ||||| || |||| || Sbjct 3201 GCAGGAGTTATGGCAGGATTGAATGTTCTTCGAATTCTCAACGAACCAACCACTGCCGCT 3142 Query 349727 ATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTA 349786 || || |||| | |||| | |||| ||| ||| | || |||||||| | Sbjct 3141 ATCGCTTATGCTTTCGATAGGGAGTGTGAAGGAGAGCGGAATGTGCTCGTTTTTGATCTC 3082 Query 349787 GGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAA 349846 || || ||| ||||| ||||| | |||| | || || ||| | | ||||| ||| Sbjct 3081 GGAGGCGGTTTCTTTGACGTATCCATCTTAACCATCGAGGATGGATTCATCGAAGTAAAA 3022 Query 349847 GCAACTGCTGGTGATACACATCTTGG-TGGAGAAGATTTTGATAATCGTCTCGTTTCGCA 349905 || |||||||||||| || ||||| |||||||| || || |||| | || ||| Sbjct 3021 TCAGTTGCTGGTGATACCCACCTTGGCCGGAGAAGACTTCGACGATCGAATGGTCCGGCA 2962 Query 349906 TTTTGTTAAAGAATTTAAGCGTCAAGCTAAAATTGATATTGGAGATAATCCTAGAGCAAT 349965 ||| | ||||| ||||| || | | ||| | | | | ||| | || | Sbjct 2961 TTTCATCGCTGAATTCAAGCGCAAACACCACAAGGATCTCAGCGCCGACCCTCGTGCGCT 2902 Query 349966 GCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAAC 350025 | || || | ||||| ||||||||||| || | | | ||||| || | | | Sbjct 2901 TCAACGACTTCGCACTGCTTGTGAACGTGCCAAACACACGCTGTCATCCTCTTCTCGGGC 2842 Query 350026 CTCTATTGAAATTGATTCTC-TTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTG 350084 || || || || || || | |||| | | ||| || |||| | ||||| |||| Sbjct 2841 TTCGATCGAGATCGACTCGCTTTGCGGCT-GCATTGACTTCTACACTAACATTACTCGTG 2783 Query 350085 CTCGGTTTGAAGAATTATGTATGGATCTTTTTAGAGCAAC--AATGGATCCTGTGGAAAA 350142 | || ||||| | || || || || || ||| ||| | || || ||||| Sbjct 2782 CCGACTTCGAAGATCTTTGCGGCGACCTCTTCCGA--AACCTCATGAACCCGGTTGAAAA 2725 Query 350143 AGTATTAAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGG 350202 | | | | |||||| || ||| ||| | || ||| | || || || | || ||||| Sbjct 2724 GGCACTGAGAGATGCTAACATGGACAAGAGTCGGATCCACGACATAATTCTCGTCGGTGG 2665 Query 350203 TTCTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACC 350262 | || ||||| | ||||| | | | | || || || | ||| ||||| || | Sbjct 2664 AGCCACTCGTATGCACAAAGTGCGAGAAATGCTCTCGGATCTGTTTTCAGGCAAGGAGCT 2605 Query 350263 TTCTAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTAT 350322 | ||| || || || ||| || | || || || |||||||| || || |||| Sbjct 2604 GAACACATCCATCAACCCCTCTGAGGCCATAGCTTACGGCGCTGCTGTACAAGCTGCTAT 2545 Query 350323 TTTATCTGGAAATAAGAGTTCTAAAATTGATGATCTATTACTACTAGATGTAACTCCACT 350382 | ||||| | ||| | | | | | ||||| |||| || || ||| ||| || Sbjct 2544 CCTTTCTGGTGACAAGTCTGAGACACTGCAGGATCTGCTACTTCTTGACGTAGTTCCCCT 2485 Query 350383 TTCGCTTGGATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATAGTAC 350442 || ||||| | |||||| || | | |||||| | | || ||||||| | Sbjct 2484 CTCACTTGGCATTGAAACTGTAGGAGGTCTGATGACTCCTTTGATCAAGAGAAATACGAT 2425 Query 350443 TGTACCTACAAAAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCGGTAAC 350502 | || || || | || || | | || | || ||| || || || | || Sbjct 2424 CATCCCAACTAAGACTAGCCGGACCGTCACCACTTATGTAGACAACCAACCGGGTGTGCT 2365 Query 350503 AATTCAAGTATTTGAAGGTGAACGTGCTCGCACTAAAGATAATAATAAACTTGGAGAATT 350562 |||| | |||| || || ||||||||| || || ||||| || ||||| | | Sbjct 2364 CATTCGAATATTCGAGGGAGAACGTGCTATGACCAAGGATAACAAACTTCTTGGCGTGCT 2305 Query 350563 TACCCTAAGTGAAATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAAGT 350613 | || ||||||||| || ||| | |||||||| || ||||| || Sbjct 2304 AAAGCTGTCCGAAATTCCAGCAGCCCCTCGTGGAGTTCCGCAAATTGAGGT 2254 >seq61737 Length=3671 Score = 96.9 bits (106), Expect = 1e-14 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 || || || || || | |||||||| || ||||| ||||| || |||||||| || ||| Sbjct 2967 CCGGCGAAAATGAGCCTCTGCTGATCGGGTGGAATGCCTTCCTTGTCCTGAATCTTCGCT 3026 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 || ||||| ||||| | || || | || |||||||| || | || ||||| || | Sbjct 3027 TTCACATTCTCAATGGTGTCCGACGCCTCGACTTCAAGGGTGATGGTTTTTCCCGTCAAG 3086 Query 140718 GTTTTTACAAAAATCTGCATT 140738 || || ||||||||||||||| Sbjct 3087 GTCTTCACAAAAATCTGCATT 3107 >seq6330 Length=14943 Score = 95.1 bits (104), Expect = 4e-14 Identities = 236/357 (66%), Gaps = 5/357 (1%) Strand=Plus/Plus Query 349532 CCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTA 349591 || ||||| || || | |||||| | | || ||||||||||| || || |||| | Sbjct 6361 CCTGAAGAGATCTCCGCTATGGTTCTTGGCAAGATGAAGGAAATCGCAGAGTCATACCTT 6420 Query 349592 GGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGT 349651 || | ||||| | || ||| | || || || ||||| || || |||||||||||| Sbjct 6421 GGAAAGGAAGTAAAGCACGCCGTTGTCACCGTCCCTGCCTACTTCAACGATGCCCAGCGT 6480 Query 349652 TCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAA 349711 || || || ||||| || | ||| || || || || || | |||| || || || Sbjct 6481 CAAGCCACTAAGGATGCCGGAACCATCGCTGGATTGAACGTCGTCCGAATCATCAACGAG 6540 Query 349712 CCCACTGCTGCAGCAATTGCATATGGGCTTGATAA-AATGAGTGACCAAGaaaaaaaTAT 349770 || || ||||| || || || || || ||||| || || ||| | ||| || || Sbjct 6541 CCGACAGCTGCCGCCATCGCCTACGGTCTTGACAAGAAGGAGGG----AGAGCGTAACAT 6596 Query 349771 TCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGG 349830 ||| | || || | || || ||||| || ||||| || | || || | || | || Sbjct 6597 CCTTGTATTCGACCTCGGAGGCGGTACCTTCGATGTGTCCATGCTTACCATCGACAACGG 6656 Query 349831 AATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGA 349887 | | || ||||| || || || ||||| || | || || |||||||| || Sbjct 6657 AGTATTCGAAGTATTGGCCACCAACGGAGATACCCACTTGGGAGGTGAAGATTTCGA 6713 >seq64043 Length=1332 Score = 84.2 bits (92), Expect = 7e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 223963 ATCACTTATATATGTTTCTATTAATTGACTATACATTATTGAATGTATATTTTCCATTGC 224022 ||| || || || ||||| ||||||| ||| |||||| |||||| ||||||||||| || Sbjct 613 ATCTCTAATGTAGGTTTCGATTAATTTACTGTACATTTCTGAATGAATATTTTCCATCGC 554 Query 224023 TATTTGAAATCCATAAAATGCTTTTGCCTCTGCTATTTGTACTTCT 224068 ||||| || |||||||| ||||| | |||||| |||||| Sbjct 553 AATTTGGAAACCATAAAAGAAGCGAGCCTCCGGTATTTGAACTTCT 508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1514006940771765