Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oesophagostomum_20dentatum_20[genbank_20GCA_5F000797555.1_202014-12- 15] 64,255 sequences; 443,017,110 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq159 134 2e-26 seq24355 122 1e-22 seq61737 91.5 2e-13 >seq159 Length=218524 Score = 134 bits (148), Expect = 2e-26 Identities = 131/165 (79%), Gaps = 9/165 (5%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGA---GTC 27461 ||||||||| || || || |||||||| || ||||| ||||| | ||||||||| ||| Sbjct 175763 AATGCAAATTTTCGTTAAAACGCTTACTGGAAAGACAATTACCCCTGAGGTTGAAGCGTC 175822 Query 27462 AGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGA 27521 || | | ||| | ||| | ||||||||||| |||||||| ||||||||||||||||| Sbjct 175823 AG---ACACCATCGAGAATGTCAAGGCTAAAATCCAGGACAAAGAGGGAATTCCTCCAGA 175879 Query 27522 CCAGCAGCGTCTAATTTTTGCTGGTAA--GCAACTCGAGGATGAT 27564 ||||||||||| ||||| || ||| | | |||| || |||||| Sbjct 175880 TCAGCAGCGTCTGATTTTCGCAGGTTAGTGTAACT-GAAGATGAT 175923 >seq24355 Length=1900 Score = 122 bits (134), Expect = 1e-22 Identities = 114/145 (79%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||||||||| || ||||| || || || |||||||| || ||||| || || | Sbjct 564 AATGCAAATCTTCGTGAAGACCCTGACAGGAAAGACTATCACACTTGAAGTCGAAGCTTC 505 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | |||| || ||||||| ||||| ||||||||||||||||| || ||||| || Sbjct 504 TGACACAATTGAGAACGTGAAGGCGAAAATCCAGGACAAGGAGGGAATCCCGCCAGATCA 445 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAG 27549 |||||| || || ||||||||| || Sbjct 444 GCAGCGACTCATATTTGCTGGTGAG 420 Score = 104 bits (114), Expect = 3e-17 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| || ||||| || ||||| ||||| || || || || || || | Sbjct 262 AATGCAGATCTTCGTGAAGACCCTGACCGGAAAGACGATCACCCTCGAAGTCGAAGCTTC 203 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| || | ||| ||||||| || |||||||| |||||||| || || || || || Sbjct 202 CGATACTATCGAGAATGTGAAGGCGAAGATTCAGGATAAGGAGGGCATCCCACCGGATCA 143 Query 27525 GCAGCGTCTAATTTTTGCTGGT 27546 ||| ||||| |||||||||||| Sbjct 142 GCAACGTCTTATTTTTGCTGGT 121 >seq61737 Length=3671 Score = 91.5 bits (100), Expect = 2e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || ||||| ||||| | || || || || || || ||||| || ||| | Sbjct 3107 AATGCAGATTTTTGTGAAGACCTTGACGGGAAAAACCATCACCCTTGAAGTCGAGGCGTC 3048 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||||| ||| |||| || || |||||||||||||| || ||||| || || || Sbjct 3047 GGACACCATTGAGAATGTGAAAGCGAAGATTCAGGACAAGGAAGGCATTCCACCCGATCA 2988 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAG 27549 |||| | || ||||| || ||| || Sbjct 2987 GCAGAGGCTCATTTTCGCCGGTGAG 2963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569852333815600