Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oesophagostomum_20dentatum_20[genbank_20GCA_5F000797555.1_202014-12- 15] 64,255 sequences; 443,017,110 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq61737 95.1 1e-14 >seq61737 Length=3671 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || |||| || || | || || |||||||| || |||| Sbjct 3106 ATGCAGATTTTTGTGAAGACCTTGACGGGAAAAACCATCACCCTTGAAGTCGAGGCGTCG 3047 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| || ||| || ||||| ||||| |||||||| ||||||||||| Sbjct 3046 GACACCATTGAGAATGTGAAAGCGAAGATTCAGGACAAGGAAGGCATTCCACCCGATCAG 2987 Query 27108 CAGCGTTTAATATACGCCGG 27127 ||| | | || | |||||| Sbjct 2986 CAGAGGCTCATTTTCGCCGG 2967 Score = 86.0 bits (94), Expect = 5e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || ||||| || || || ||| | ||||| || ||||| || | || Sbjct 3420 ATGCAAATTTTCGTGAAAACACTTACTGGAAAGACCATTACCCTGGAAGTCGAGGCTTCA 3361 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| || ||| |||||||||||||| |||||||| ||||| ||||| Sbjct 3360 GATACTATTGAGAATGTGAAAGCCAAAATTCAAGACAAGGAAGGCATCCCACCAGATCAG 3301 Query 27108 CA 27109 || Sbjct 3300 CA 3299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434569078977600