Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oesophagostomum_20dentatum_20[genbank_20GCA_5F000797555.1_202014-12- 15] 64,255 sequences; 443,017,110 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq24355 102 2e-16 seq61737 93.3 1e-13 seq159 93.3 1e-13 >seq24355 Length=1900 Score = 102 bits (112), Expect = 2e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 ||||| ||||||||||| || || || || || | ||| || ||||||||||| || Sbjct 1718 CCTGCAAAGATAAGGCGCTGCTGATCTGGTGGGATTCCCTCTTTGTCCTGGATTTTGGCC 1777 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 ||||| |||||||| ||||| || || || || || |||||||||||||| || || Sbjct 1778 TTCACATTTTCGATTGTGTCTGATGCCTCGACTTCCAGGGTGATCGTCTTTCCTGTCAGC 1837 Query 211095 GTCTTTACAAACACCTGCATT 211115 || || || || | ||||||| Sbjct 1838 GTTTTCACGAAAATCTGCATT 1858 Score = 93.3 bits (102), Expect = 1e-13 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 || || || ||||| ||||| || || || || | || ||||| ||||| ||||| Sbjct 122 CCAGCAAAAATAAGACGTTGCTGATCCGGTGGGATGCCCTCCTTATCCTGAATCTTCGCC 181 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 ||||| || ||||| || || || ||| || ||||| |||||||||||||| || || Sbjct 182 TTCACATTCTCGATAGTATCGGAAGCTTCGACTTCGAGGGTGATCGTCTTTCCGGTCAGG 241 Query 211095 GTCTTTACAAACACCTGCATT 211115 ||||| || || | ||||||| Sbjct 242 GTCTTCACGAAGATCTGCATT 262 Score = 87.8 bits (96), Expect = 4e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 || || || || || || || || || || || | ||| |||||||||||||| || Sbjct 424 CCAGCAAATATGAGTCGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGGATTTTCGCC 483 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 |||||||| || || |||||||| ||| || || || ||||| |||||||| || || Sbjct 484 TTCACGTTCTCAATTGTGTCAGAAGCTTCGACTTCAAGTGTGATAGTCTTTCCTGTCAGG 543 Query 211095 GTCTTTACAAACACCTGCATT 211115 ||||| || || | |||||| Sbjct 544 GTCTTCACGAAGATTTGCATT 564 >seq61737 Length=3671 Score = 93.3 bits (102), Expect = 1e-13 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 || ||||| || || | || || || || |||| |||||||||||||| ||||| | Sbjct 2967 CCGGCGAAAATGAGCCTCTGCTGATCGGGTGGAATGCCTTCCTTGTCCTGAATCTTCGCT 3026 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 ||||| || || |||||||| || || || || || ||||| || |||||||| | Sbjct 3027 TTCACATTCTCAATGGTGTCCGACGCCTCGACTTCAAGGGTGATGGTTTTTCCCGTCAAG 3086 Query 211095 GTCTTTACAAACACCTGCATT 211115 ||||| ||||| | ||||||| Sbjct 3087 GTCTTCACAAAAATCTGCATT 3107 >seq159 Length=218524 Score = 93.3 bits (102), Expect = 1e-13 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 |||||||| || || || || || || ||||||| ||| || ||||||||||| || Sbjct 175903 CCTGCGAAAATCAGACGCTGCTGATCTGGAGGAATTCCCTCTTTGTCCTGGATTTTAGCC 175844 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 || || || ||||||||||| || ||||||||| | || || |||||||| || || Sbjct 175843 TTGACATTCTCGATGGTGTCTGACGCTTCAACCTCAGGGGTAATTGTCTTTCCAGTAAGC 175784 Query 211095 GTCTTTACAAACACCTGCATT 211115 || || || || | |||||| Sbjct 175783 GTTTTAACGAAAATTTGCATT 175763 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158197708193075