Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oesophagostomum_20dentatum_20[genbank_20GCA_5F000797555.1_202014-12- 15] 64,255 sequences; 443,017,110 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq24355 120 6e-22 seq61737 89.7 1e-12 >seq24355 Length=1900 Score = 120 bits (132), Expect = 6e-22 Identities = 111/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 || ||||| || | |||||| || || || || |||||||| || || ||||| || Sbjct 122 CCAGCAAAAATAAGACGTTGCTGATCCGGTGGGATGCCCTCCTTATCCTGAATCTTCGCC 181 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || || | |||||||| || ||||||||||||||||| ||||||||||| || |||| Sbjct 182 TTCACATTCTCGATAGTATCGGAAGCTTCGACTTCGAGGGTGATCGTCTTTCCGGTCAGG 241 Query 283080 GTCTTAACGAATATCTGCATT 283100 ||||| ||||| ||||||||| Sbjct 242 GTCTTCACGAAGATCTGCATT 262 Score = 105 bits (116), Expect = 1e-17 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 || ||||| || | || || || || ||| || ||||||||||| ||||| || || Sbjct 424 CCAGCAAATATGAGTCGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGGATTTTCGCC 483 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || ||| | || || ||||| |||||||||||||| || ||||| ||||| || |||| Sbjct 484 TTCACGTTCTCAATTGTGTCAGAAGCTTCGACTTCAAGTGTGATAGTCTTTCCTGTCAGG 543 Query 283080 GTCTTAACGAATATCTGCATT 283100 ||||| ||||| || |||||| Sbjct 544 GTCTTCACGAAGATTTGCATT 564 Score = 96.9 bits (106), Expect = 7e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 || |||||||| | || || || || || || ||||| ||||| ||||| || || Sbjct 1718 CCTGCAAAGATAAGGCGCTGCTGATCTGGTGGGATTCCCTCTTTGTCCTGGATTTTGGCC 1777 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || || | ||||| ||||| || || |||||||| || ||||||||||| || |||| Sbjct 1778 TTCACATTTTCGATTGTGTCTGATGCCTCGACTTCCAGGGTGATCGTCTTTCCTGTCAGC 1837 Query 283080 GTCTTAACGAATATCTGCATT 283100 || || ||||| ||||||||| Sbjct 1838 GTTTTCACGAAAATCTGCATT 1858 >seq61737 Length=3671 Score = 89.7 bits (98), Expect = 1e-12 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || ||||||||||| | | ||| || || || || || ||||||||||| || || Sbjct 3278 TTACCGGCAAAGATGAGCCTTTGCTGATCTGGTGGGATGCCTTCCTTGTCTTGAATTTTG 3337 Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076 ||||| || | || ||||| || ||||| |||||||| || || || ||||| || || Sbjct 3338 GCTTTCACATTCTCAATAGTATCTGAAGCCTCGACTTCCAGGGTAATGGTCTTTCCAGTA 3397 Query 283077 AAAGTCTTAACGAATATCTGCATT 283100 | || || ||||| || |||||| Sbjct 3398 AGTGTTTTCACGAAAATTTGCATT 3421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1045877453962770