Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oesophagostomum_20dentatum_20[genbank_20GCA_5F000797555.1_202014-12- 15] 64,255 sequences; 443,017,110 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq24355 116 9e-21 seq159 116 9e-21 seq61737 104 6e-17 >seq24355 Length=1900 Score = 116 bits (128), Expect = 9e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||||||||| || |||||||| ||||||||||| || || || |||||| Sbjct 1854 CAGATTTTCGTGAAAACGCTGACAGGAAAGACGATCACCCTGGAAGTCGAGGCATCAGAC 1795 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || || || || || ||||||||||| |||||||| || || ||||| Sbjct 1794 ACAATCGAAAATGTGAAGGCCAAAATCCAGGACAAAGAGGGAATCCCACCAGATCAGCAG 1735 Query 178044 CGACTTATCTTCGCCGG 178060 || |||||||| || || Sbjct 1734 CGCCTTATCTTTGCAGG 1718 Score = 107 bits (118), Expect = 5e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || || ||||| |||||||||||||| || ||| || || Sbjct 258 CAGATCTTCGTGAAGACCCTGACCGGAAAGACGATCACCCTCGAAGTCGAAGCTTCCGAT 199 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||| || || ||||||||||| || || || ||||| ||||| |||||| Sbjct 198 ACTATCGAGAATGTGAAGGCGAAGATTCAGGATAAGGAGGGCATCCCACCGGATCAGCAA 139 Query 178044 CGACTTATCTTCGCCGG 178060 || ||||| || || || Sbjct 138 CGTCTTATTTTTGCTGG 122 >seq159 Length=218524 Score = 116 bits (128), Expect = 9e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| ||||| || || ||||| || || |||| ||||| ||| |||||| Sbjct 175767 CAAATTTTCGTTAAAACGCTTACTGGAAAGACAATTACCCCTGAGGTTGAAGCGTCAGAC 175826 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| ||||| || || ||||||||||| ||||| ||||| || ||||| Sbjct 175827 ACCATCGAGAATGTCAAGGCTAAAATCCAGGACAAAGAGGGAATTCCTCCAGATCAGCAG 175886 Query 178044 CGACTTATCTTCGCCGG 178060 || || || ||||| || Sbjct 175887 CGTCTGATTTTCGCAGG 175903 >seq61737 Length=3671 Score = 104 bits (114), Expect = 6e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||||||||| || || ||||| || || ||||| || || || ||||| Sbjct 3417 CAAATTTTCGTGAAAACACTTACTGGAAAGACCATTACCCTGGAAGTCGAGGCTTCAGAT 3358 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || ||| || ||||| ||||| ||||| ||||| || || |||||| Sbjct 3357 ACTATTGAGAATGTGAAAGCCAAAATTCAAGACAAGGAAGGCATCCCACCAGATCAGCAA 3298 Query 178044 CGACTTATCTTCGCCGGAAA 178063 | || ||||| ||||| || Sbjct 3297 AGGCTCATCTTTGCCGGTAA 3278 Score = 98.7 bits (108), Expect = 2e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| ||||| || | || |||||||| |||||||| || || || || ||| Sbjct 3103 CAGATTTTTGTGAAGACCTTGACGGGAAAAACCATCACCCTTGAAGTCGAGGCGTCGGAC 3044 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| || ||| |||||||||||||| ||||| || || || || ||||| Sbjct 3043 ACCATTGAGAATGTGAAAGCGAAGATTCAGGACAAGGAAGGCATTCCACCCGATCAGCAG 2984 Query 178044 CGACTTATCTTCGCCGG 178060 | || || |||||||| Sbjct 2983 AGGCTCATTTTCGCCGG 2967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202740207600470