Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20flexuosa_20[genbank_20GCA_5F000951355.1_202014-09-26] 45,472 sequences; 86,175,476 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq11331 102 1e-16 seq7536 87.8 2e-12 >seq11331 Length=1923 Score = 102 bits (112), Expect = 1e-16 Identities = 101/131 (77%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 53516 AGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTA 53575 || ||||| || || ||||| |||||||||||||| || || || | ||||||||||||| Sbjct 191 AGGATAAAAGCATCAGCTAAGCCTTGAACACCAATGCCAATCGGACGATGTCTCTTATTA 132 Query 53576 GAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTTTCTG 53635 || ||| ||||| || | ||||||||||| ||| |||| |||||| | ||| | Sbjct 131 GATCGTTCCGCTTCCGGTACTGGATAATAATTGCGATCAATAACTTTATTCAAATTTTTA 72 Query 53636 ACAATTACTTT 53646 || | |||||| Sbjct 71 ACCACTACTTT 61 >seq7536 Length=2681 Score = 87.8 bits (96), Expect = 2e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 53516 AGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTA 53575 || ||||| || || |||| || ||||||||||| || || || | |||||| |||||| Sbjct 1589 AGGATAAAAGCATCAGCTAGGCCCTGAACACCAATGCCAATTGGACGATGTCTATTATTA 1648 Query 53576 GAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTTTCTG 53635 || ||| ||||| || | ||||||||||| ||| ||||||||||| | ||| Sbjct 1649 GATCGTTCCGCTTCCGGTACTGGATAATAATTGCGATCAATAATTTTATTCAAATTTTCA 1708 Query 53636 ACAATTACTTT 53646 || | |||||| Sbjct 1709 ACCACTACTTT 1719 Score = 82.4 bits (90), Expect = 9e-11 Identities = 126/180 (70%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 53149 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 53208 ||| ||||| ||| || || || | |||||||| | ||| |||||||| || || | Sbjct 984 TACCTGAAAAGTTCCGGATAAGACATTACGAGTGTACAAATTGCTGGTATAAGGCTCAAT 1043 Query 53209 AGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 53268 | |||||||| | | || ||||| ||||| ||||||||||| ||||| |||| Sbjct 1044 ACTTTCATTATTGTCAAGTATCTGAGCGGTTGAAGCAGTCGGCATTAATGCCAATAATAC 1103 Query 53269 ACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATC 53328 |||||| | || || || || ||||| || || || | |||||| ||| |||| Sbjct 1104 ACTATTCCGAATGCCATACATTGCAATTTTTTCACGTAAAGTTACCCAATCCCATTGATC 1163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593384128642560