Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onchocerca_20flexuosa_20[genbank_20GCA_5F000951355.1_202014-09-26]
45,472 sequences; 86,175,476 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq11331 102 1e-16
seq7536 87.8 2e-12
>seq11331
Length=1923
Score = 102 bits (112), Expect = 1e-16
Identities = 101/131 (77%), Gaps = 0/131 (0%)
Strand=Plus/Minus
Query 53516 AGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTA 53575
|| ||||| || || ||||| |||||||||||||| || || || | |||||||||||||
Sbjct 191 AGGATAAAAGCATCAGCTAAGCCTTGAACACCAATGCCAATCGGACGATGTCTCTTATTA 132
Query 53576 GAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTTTCTG 53635
|| ||| ||||| || | ||||||||||| ||| |||| |||||| | ||| |
Sbjct 131 GATCGTTCCGCTTCCGGTACTGGATAATAATTGCGATCAATAACTTTATTCAAATTTTTA 72
Query 53636 ACAATTACTTT 53646
|| | ||||||
Sbjct 71 ACCACTACTTT 61
>seq7536
Length=2681
Score = 87.8 bits (96), Expect = 2e-12
Identities = 98/131 (75%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 53516 AGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTA 53575
|| ||||| || || |||| || ||||||||||| || || || | |||||| ||||||
Sbjct 1589 AGGATAAAAGCATCAGCTAGGCCCTGAACACCAATGCCAATTGGACGATGTCTATTATTA 1648
Query 53576 GAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTTTCTG 53635
|| ||| ||||| || | ||||||||||| ||| ||||||||||| | |||
Sbjct 1649 GATCGTTCCGCTTCCGGTACTGGATAATAATTGCGATCAATAATTTTATTCAAATTTTCA 1708
Query 53636 ACAATTACTTT 53646
|| | ||||||
Sbjct 1709 ACCACTACTTT 1719
Score = 82.4 bits (90), Expect = 9e-11
Identities = 126/180 (70%), Gaps = 0/180 (0%)
Strand=Plus/Plus
Query 53149 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 53208
||| ||||| ||| || || || | |||||||| | ||| |||||||| || || |
Sbjct 984 TACCTGAAAAGTTCCGGATAAGACATTACGAGTGTACAAATTGCTGGTATAAGGCTCAAT 1043
Query 53209 AGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 53268
| |||||||| | | || ||||| ||||| ||||||||||| ||||| ||||
Sbjct 1044 ACTTTCATTATTGTCAAGTATCTGAGCGGTTGAAGCAGTCGGCATTAATGCCAATAATAC 1103
Query 53269 ACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATC 53328
|||||| | || || || || ||||| || || || | |||||| ||| ||||
Sbjct 1104 ACTATTCCGAATGCCATACATTGCAATTTTTTCACGTAAAGTTACCCAATCCCATTGATC 1163
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593384128642560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |