Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onchocerca_20flexuosa_20[genbank_20GCA_5F000951355.1_202014-09-26]
45,472 sequences; 86,175,476 total letters
Query= NC_001993.1
Length=236120
Score E
Sequences producing significant alignments: (Bits) Value
seq21486 95.1 2e-14
seq13328 91.5 2e-13
>seq21486
Length=1089
Score = 95.1 bits (104), Expect = 2e-14
Identities = 105/140 (75%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
|||||||| ||| |||| || | ||||||||||| || ||| |||| ||||||| |
Sbjct 1039 ATGCAAATCTTTGTAAAAACGTTGACAGGCAAAACAATCACTCTAGAAGTTGAAGCCTCT 980
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
|||||||| ||| |||| || |||||||| |||||||| || || || |||||
Sbjct 979 GATACAATCGAAAATGTAAAGGCCAAGATTCAAGACAAAGAAGGAATTCCGCCAGATCAG 920
Query 124659 CAAAGGCTTATTTTTGCAGG 124678
|| | |||||||| || ||
Sbjct 919 CAGCGTCTTATTTTCGCTGG 900
Score = 86.0 bits (94), Expect = 9e-12
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
||||| || || ||||||| || || |||||||| ||||| | || | |||||
Sbjct 723 ATGCAGATTTTCGTAAAGACGCTTACTGGCAAAACCATAACGCTGGAAGTAGAAGCTTCG 664
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
||||| || ||| | ||| |||||||| |||||||| || || || ||||||||
Sbjct 663 GATACGATCGAGAATGTGAAAGCCAAAATTCAGGATAAAGAGGGCATCCCTCCTGATCAG 604
Query 124659 CAAAGGCTTATTTTTGCAGG 124678
|| | ||||||||||||||
Sbjct 603 CAGCGTCTTATTTTTGCAGG 584
>seq13328
Length=1679
Score = 91.5 bits (100), Expect = 2e-13
Identities = 106/143 (74%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
||||||||||| | || ||| | || || || || || || | ||| | ||| | |
Sbjct 47 ATGCAAATATTCGTGAAAACATTGACTGGTAAGACGATTACCCTTGAGGTAGAATCGTCT 106
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
||||| ||| ||| | || |||||||| ||||| |||||||| |||||||||||
Sbjct 107 GATACCATTGAGAATGTGAAGGCTAAAATTCAGGATAAGGAAGGTATCCCACCTGATCAG 166
Query 124659 CAAAGGCTTATTTTTGCAGGAAA 124681
||| | |||||||||||||| ||
Sbjct 167 CAACGACTTATTTTTGCAGGTAA 189
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 755026598809600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |