Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20flexuosa_20[genbank_20GCA_5F000951355.1_202014-09-26] 45,472 sequences; 86,175,476 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq21486 95.1 2e-14 seq13328 91.5 2e-13 >seq21486 Length=1089 Score = 95.1 bits (104), Expect = 2e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| |||| || | ||||||||||| || ||| |||| ||||||| | Sbjct 1039 ATGCAAATCTTTGTAAAAACGTTGACAGGCAAAACAATCACTCTAGAAGTTGAAGCCTCT 980 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 |||||||| ||| |||| || |||||||| |||||||| || || || ||||| Sbjct 979 GATACAATCGAAAATGTAAAGGCCAAGATTCAAGACAAAGAAGGAATTCCGCCAGATCAG 920 Query 124659 CAAAGGCTTATTTTTGCAGG 124678 || | |||||||| || || Sbjct 919 CAGCGTCTTATTTTCGCTGG 900 Score = 86.0 bits (94), Expect = 9e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || ||||||| || || |||||||| ||||| | || | ||||| Sbjct 723 ATGCAGATTTTCGTAAAGACGCTTACTGGCAAAACCATAACGCTGGAAGTAGAAGCTTCG 664 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| || ||| | ||| |||||||| |||||||| || || || |||||||| Sbjct 663 GATACGATCGAGAATGTGAAAGCCAAAATTCAGGATAAAGAGGGCATCCCTCCTGATCAG 604 Query 124659 CAAAGGCTTATTTTTGCAGG 124678 || | |||||||||||||| Sbjct 603 CAGCGTCTTATTTTTGCAGG 584 >seq13328 Length=1679 Score = 91.5 bits (100), Expect = 2e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||||||||| | || ||| | || || || || || || | ||| | ||| | | Sbjct 47 ATGCAAATATTCGTGAAAACATTGACTGGTAAGACGATTACCCTTGAGGTAGAATCGTCT 106 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| ||| | || |||||||| ||||| |||||||| ||||||||||| Sbjct 107 GATACCATTGAGAATGTGAAGGCTAAAATTCAGGATAAGGAAGGTATCCCACCTGATCAG 166 Query 124659 CAAAGGCTTATTTTTGCAGGAAA 124681 ||| | |||||||||||||| || Sbjct 167 CAACGACTTATTTTTGCAGGTAA 189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755026598809600