Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onchocerca_20flexuosa_20[genbank_20GCA_5F000951355.1_202014-09-26]
45,472 sequences; 86,175,476 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq21486 84.2 2e-11
seq39641 82.4 7e-11
>seq21486
Length=1089
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||||||||| || ||| | || || ||||| || || | || || || | ||
Sbjct 376 ATGCAAATTTTCGTTAAAACTTTAACGGGTAAAACCATAACGTTGGAAGTGGAGGCTTCG 317
Query 31253 GACAGTGTCG-AAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|| | ||| ||||| | || || || || ||||||||| ||| | || || || ||
Sbjct 316 GATACCATCGAAAACGTTAAAGCAAAG-ATTCAGGACAAGGAGGGCATTCCACCAGATCA 258
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
||||| | || || || || ||||| |||| || | || || || |||||
Sbjct 257 ACAGCGATTGATCTTTGCCGGAAAACAACTGGAGGATGGTCGTACGCTGTCGGACTATAA 198
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419
|| || || |||||||| ||||| ||||| ||| | || | |||||
Sbjct 197 TATCCAGAAGGAATCGACGCTTCACCTGGTTCTTCGTCTTCGCGGCGG 150
Score = 82.4 bits (90), Expect = 7e-11
Identities = 102/140 (73%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||| || ||||| || ||||||||||||| ||||| | || |||||| | ||
Sbjct 1039 ATGCAAATCTTTGTAAAAACGTTGACAGGCAAAACAATCACTCTAGAAGTTGAAGCCTCT 980
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|| | |||||| || || | || ||||| ||||| | ||||| || |||
Sbjct 979 GATACAATCGAAAATGTAAAGGCCAAGATTCAAGACAAAGAAGGAATTCCGCCAGATCAG 920
Query 31313 CAGCGTCTAATATTCGCTGG 31332
|||||||| || ||||||||
Sbjct 919 CAGCGTCTTATTTTCGCTGG 900
>seq39641
Length=587
Score = 82.4 bits (90), Expect = 7e-11
Identities = 102/140 (73%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||||||||| ||||| ||||| || || ||||||||||| | || || ||| | ||
Sbjct 187 ATGCAAATTTTTGTAAAAACTCTTACTGGTAAAACGATCACATTGGAAGTAGAAGCATCT 246
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|| | | |||| | || ||| || ||| |||||| ||||| | || || || ||
Sbjct 247 GATACTATCGAGAATGTGAAAGCGAAAATCCAGGACAAAGAAGGAATTCCACCGGATCAA 306
Query 31313 CAGCGTCTAATATTCGCTGG 31332
||||| | || ||||||||
Sbjct 307 CAGCGATTGATCTTCGCTGG 326
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445513026378240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |