Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onchocerca_20flexuosa_20[genbank_20GCA_5F000951355.1_202014-09-26]
45,472 sequences; 86,175,476 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq11331 93.3 4e-14
seq7536 87.8 2e-12
>seq11331
Length=1923
Score = 93.3 bits (102), Expect = 4e-14
Identities = 99/131 (76%), Gaps = 0/131 (0%)
Strand=Plus/Minus
Query 37507 ATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTATTAGAT 37566
||||| ||||||| || || |||||||| || || || || | |||| |||||||||||
Sbjct 188 ATAAAAGCATCAGCTAAGCCTTGAACACCAATGCCAATCGGACGATGTCTCTTATTAGAT 129
Query 37567 CTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGATTTTTAACT 37626
| || ||| ||||||||||||||| ||| || | |||||| | |||||||||
Sbjct 128 CGTTCCGCTTCCGGTACTGGATAATAATTGCGATCAATAACTTTATTCAAATTTTTAACC 69
Query 37627 AGTATTTTCGT 37637
| || ||| ||
Sbjct 68 ACTACTTTTGT 58
>seq7536
Length=2681
Score = 87.8 bits (96), Expect = 2e-12
Identities = 98/131 (75%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 37507 ATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTATTAGAT 37566
||||| ||||||| | ||||||||||| || || || || | |||| | |||||||||
Sbjct 1592 ATAAAAGCATCAGCTAGGCCCTGAACACCAATGCCAATTGGACGATGTCTATTATTAGAT 1651
Query 37567 CTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGATTTTTAACT 37626
| || ||| ||||||||||||||| ||| || |||||||| | ||||| |||
Sbjct 1652 CGTTCCGCTTCCGGTACTGGATAATAATTGCGATCAATAATTTTATTCAAATTTTCAACC 1711
Query 37627 AGTATTTTCGT 37637
| || ||| ||
Sbjct 1712 ACTACTTTTGT 1722
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 468258490503680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |