Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20flexuosa_20[genbank_20GCA_5F000951355.1_202014-09-26] 45,472 sequences; 86,175,476 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq11331 93.3 4e-14 seq7536 87.8 2e-12 >seq11331 Length=1923 Score = 93.3 bits (102), Expect = 4e-14 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 37507 ATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTATTAGAT 37566 ||||| ||||||| || || |||||||| || || || || | |||| ||||||||||| Sbjct 188 ATAAAAGCATCAGCTAAGCCTTGAACACCAATGCCAATCGGACGATGTCTCTTATTAGAT 129 Query 37567 CTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGATTTTTAACT 37626 | || ||| ||||||||||||||| ||| || | |||||| | ||||||||| Sbjct 128 CGTTCCGCTTCCGGTACTGGATAATAATTGCGATCAATAACTTTATTCAAATTTTTAACC 69 Query 37627 AGTATTTTCGT 37637 | || ||| || Sbjct 68 ACTACTTTTGT 58 >seq7536 Length=2681 Score = 87.8 bits (96), Expect = 2e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 37507 ATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTATTAGAT 37566 ||||| ||||||| | ||||||||||| || || || || | |||| | ||||||||| Sbjct 1592 ATAAAAGCATCAGCTAGGCCCTGAACACCAATGCCAATTGGACGATGTCTATTATTAGAT 1651 Query 37567 CTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGATTTTTAACT 37626 | || ||| ||||||||||||||| ||| || |||||||| | ||||| ||| Sbjct 1652 CGTTCCGCTTCCGGTACTGGATAATAATTGCGATCAATAATTTTATTCAAATTTTCAACC 1711 Query 37627 AGTATTTTCGT 37637 | || ||| || Sbjct 1712 ACTACTTTTGT 1722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468258490503680