Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20flexuosa_20[genbank_20GCA_5F000951355.1_202014-09-26] 45,472 sequences; 86,175,476 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq2700 102 8e-17 seq21486 82.4 8e-11 >seq2700 Length=5623 Score = 102 bits (112), Expect = 8e-17 Identities = 114/150 (76%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 ||||| ||| | |||| || |||||||| |||||||||||||||||||| ||| | || Sbjct 544 TTACCTGCAAAAATCAATCGCTGCTGATCTGGAGGTATGCCTTCTTTGTC-CTGAATCTT 602 Query 139682 TG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 | ||||| | ||| | || || | || || ||||||| || | |||||| || || Sbjct 603 CGCTTTTACATTTTCAATCGTATCCGAGGATTCGACCTCAAGTGTGATCGTCTTACCAGT 662 Query 139741 CAACGTTTTTACGAATATTTGCATAGCTTA 139770 || || |||||||| |||||||||| ||| Sbjct 663 TAAAGTCTTTACGAAAATTTGCATAGTTTA 692 >seq21486 Length=1089 Score = 82.4 bits (90), Expect = 8e-11 Identities = 106/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 139623 TACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTT 139682 ||||||| | || ||||| |||||||| || || || ||||||||||| ||| | || Sbjct 898 TACCAGCGAAAATAAGACGCTGCTGATCTGGCGGAATTCCTTCTTTGTC-TTGAATCTTG 956 Query 139683 G-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741 | |||| | ||| | ||| || | || || || || | || | || ||||| ||| Sbjct 957 GCCTTTACATTTTCGATTGTATCAGAGGCTTCAACTTCTAGAGTGATTGTTTTGCCTGTC 1016 Query 139742 AACGTTTTTACGAATATTTGCATA 139765 ||||||||||| || ||||||||| Sbjct 1017 AACGTTTTTACAAAGATTTGCATA 1040 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495782037222400