Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onchocerca_20flexuosa_20[genbank_20GCA_5F000951355.1_202014-09-26]
45,472 sequences; 86,175,476 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq2700 102 8e-17
seq21486 82.4 8e-11
>seq2700
Length=5623
Score = 102 bits (112), Expect = 8e-17
Identities = 114/150 (76%), Gaps = 2/150 (1%)
Strand=Plus/Plus
Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681
||||| ||| | |||| || |||||||| |||||||||||||||||||| ||| | ||
Sbjct 544 TTACCTGCAAAAATCAATCGCTGCTGATCTGGAGGTATGCCTTCTTTGTC-CTGAATCTT 602
Query 139682 TG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740
| ||||| | ||| | || || | || || ||||||| || | |||||| || ||
Sbjct 603 CGCTTTTACATTTTCAATCGTATCCGAGGATTCGACCTCAAGTGTGATCGTCTTACCAGT 662
Query 139741 CAACGTTTTTACGAATATTTGCATAGCTTA 139770
|| || |||||||| |||||||||| |||
Sbjct 663 TAAAGTCTTTACGAAAATTTGCATAGTTTA 692
>seq21486
Length=1089
Score = 82.4 bits (90), Expect = 8e-11
Identities = 106/144 (74%), Gaps = 2/144 (1%)
Strand=Plus/Plus
Query 139623 TACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTT 139682
||||||| | || ||||| |||||||| || || || ||||||||||| ||| | ||
Sbjct 898 TACCAGCGAAAATAAGACGCTGCTGATCTGGCGGAATTCCTTCTTTGTC-TTGAATCTTG 956
Query 139683 G-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741
| |||| | ||| | ||| || | || || || || | || | || ||||| |||
Sbjct 957 GCCTTTACATTTTCGATTGTATCAGAGGCTTCAACTTCTAGAGTGATTGTTTTGCCTGTC 1016
Query 139742 AACGTTTTTACGAATATTTGCATA 139765
||||||||||| || |||||||||
Sbjct 1017 AACGTTTTTACAAAGATTTGCATA 1040
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 495782037222400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |