Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20flexuosa_20[genbank_20GCA_5F000951355.1_202014-09-26] 45,472 sequences; 86,175,476 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq2700 111 2e-19 seq21486 87.8 2e-12 seq11331 84.2 2e-11 seq13328 82.4 8e-11 >seq2700 Length=5623 Score = 111 bits (122), Expect = 2e-19 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 143042 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 143101 ||||| ||| | |||| || |||||||| |||||||||||||||||||| ||| || Sbjct 544 TTACCTGCAAAAATCAATCGCTGCTGATCTGGAGGTATGCCTTCTTTGTCCTGAATCTTC 603 Query 143102 TGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 143161 ||||| | ||| | ||| |||| || ||| || |||| || | |||||| || || Sbjct 604 GCTTTTACATTTTCAATCGTATCCGAGGATTCGACCTCAAGTGTGATCGTCTTACCAGTT 663 Query 143162 AATGTTTTTACGAATATTTGCATAGCTTA 143190 || || |||||||| |||||||||| ||| Sbjct 664 AAAGTCTTTACGAAAATTTGCATAGTTTA 692 >seq21486 Length=1089 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 143043 TACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTT 143102 ||||||| | || ||||| |||||||| || || || ||||||||||| ||| || Sbjct 898 TACCAGCGAAAATAAGACGCTGCTGATCTGGCGGAATTCCTTCTTTGTCTTGAATCTTGG 957 Query 143103 GTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCA 143162 |||| | ||| | || || | || ||| ||||| | ||| | || ||||| |||| Sbjct 958 CCTTTACATTTTCGATTGTATCAGAGGCTTCAACTTCTAGAGTGATTGTTTTGCCTGTCA 1017 Query 143163 ATGTTTTTACGAATATTTGCATA 143185 | |||||||| || ||||||||| Sbjct 1018 ACGTTTTTACAAAGATTTGCATA 1040 >seq11331 Length=1923 Score = 84.2 bits (92), Expect = 2e-11 Identities = 101/135 (75%), Gaps = 7/135 (5%) Strand=Plus/Minus Query 156871 AAATGCATCGGCCAAACCTTGAATGCCAATGCCGATGGGACGATGGCGCATATTAGAttt 156930 ||| ||||| || || ||||||| |||||||| || |||||||| | | |||||||| Sbjct 186 AAAAGCATCAGCTAAGCCTTGAACACCAATGCCAATCGGACGATGTCTCTTATTAGATCG 127 Query 156931 ttttGCAGTTTCAATA--GGGTAGAAATTGCGATCAATAATTTTATTCAAA---CTATCC 156985 || || || | || || || ||||||||||||||| |||||||||| || || Sbjct 126 TTCCGC--TTCCGGTACTGGATAATAATTGCGATCAATAACTTTATTCAAATTTTTAACC 69 Query 156986 ACTACATGTTTGACC 157000 ||||| | | ||||| Sbjct 68 ACTACTTTTGTGACC 54 >seq13328 Length=1679 Score = 82.4 bits (90), Expect = 8e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 143042 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 143101 ||||| ||| | || || ||||||||||| || || || ||||| || || |||||| Sbjct 189 TTACCTGCAAAAATAAGTCGTTGCTGATCAGGTGGGATACCTTCCTTATCCTGAATTTTA 130 Query 143102 TGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 143161 || | | || | || || | | |||||| |||| || | |||||| || ||| Sbjct 129 GCCTTCACATTCTCAATGGTATCAGACGATTCTACCTCAAGGGTAATCGTCTTACCAGTC 70 Query 143162 AATGTTTTTACGAATATTTGCAT 143184 |||||||| |||||||||||||| Sbjct 69 AATGTTTTCACGAATATTTGCAT 47 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506726213015040