Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onchocerca_20flexuosa_20[genbank_20GCA_5F000951355.1_202014-09-26]
45,472 sequences; 86,175,476 total letters
Query= NC_004117.1
Length=158482
Score E
Sequences producing significant alignments: (Bits) Value
seq2700 111 2e-19
seq21486 87.8 2e-12
seq11331 84.2 2e-11
seq13328 82.4 8e-11
>seq2700
Length=5623
Score = 111 bits (122), Expect = 2e-19
Identities = 114/149 (77%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 143042 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 143101
||||| ||| | |||| || |||||||| |||||||||||||||||||| ||| ||
Sbjct 544 TTACCTGCAAAAATCAATCGCTGCTGATCTGGAGGTATGCCTTCTTTGTCCTGAATCTTC 603
Query 143102 TGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 143161
||||| | ||| | ||| |||| || ||| || |||| || | |||||| || ||
Sbjct 604 GCTTTTACATTTTCAATCGTATCCGAGGATTCGACCTCAAGTGTGATCGTCTTACCAGTT 663
Query 143162 AATGTTTTTACGAATATTTGCATAGCTTA 143190
|| || |||||||| |||||||||| |||
Sbjct 664 AAAGTCTTTACGAAAATTTGCATAGTTTA 692
>seq21486
Length=1089
Score = 87.8 bits (96), Expect = 2e-12
Identities = 105/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 143043 TACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTT 143102
||||||| | || ||||| |||||||| || || || ||||||||||| ||| ||
Sbjct 898 TACCAGCGAAAATAAGACGCTGCTGATCTGGCGGAATTCCTTCTTTGTCTTGAATCTTGG 957
Query 143103 GTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCA 143162
|||| | ||| | || || | || ||| ||||| | ||| | || ||||| ||||
Sbjct 958 CCTTTACATTTTCGATTGTATCAGAGGCTTCAACTTCTAGAGTGATTGTTTTGCCTGTCA 1017
Query 143163 ATGTTTTTACGAATATTTGCATA 143185
| |||||||| || |||||||||
Sbjct 1018 ACGTTTTTACAAAGATTTGCATA 1040
>seq11331
Length=1923
Score = 84.2 bits (92), Expect = 2e-11
Identities = 101/135 (75%), Gaps = 7/135 (5%)
Strand=Plus/Minus
Query 156871 AAATGCATCGGCCAAACCTTGAATGCCAATGCCGATGGGACGATGGCGCATATTAGAttt 156930
||| ||||| || || ||||||| |||||||| || |||||||| | | ||||||||
Sbjct 186 AAAAGCATCAGCTAAGCCTTGAACACCAATGCCAATCGGACGATGTCTCTTATTAGATCG 127
Query 156931 ttttGCAGTTTCAATA--GGGTAGAAATTGCGATCAATAATTTTATTCAAA---CTATCC 156985
|| || || | || || || ||||||||||||||| |||||||||| || ||
Sbjct 126 TTCCGC--TTCCGGTACTGGATAATAATTGCGATCAATAACTTTATTCAAATTTTTAACC 69
Query 156986 ACTACATGTTTGACC 157000
||||| | | |||||
Sbjct 68 ACTACTTTTGTGACC 54
>seq13328
Length=1679
Score = 82.4 bits (90), Expect = 8e-11
Identities = 104/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 143042 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 143101
||||| ||| | || || ||||||||||| || || || ||||| || || ||||||
Sbjct 189 TTACCTGCAAAAATAAGTCGTTGCTGATCAGGTGGGATACCTTCCTTATCCTGAATTTTA 130
Query 143102 TGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 143161
|| | | || | || || | | |||||| |||| || | |||||| || |||
Sbjct 129 GCCTTCACATTCTCAATGGTATCAGACGATTCTACCTCAAGGGTAATCGTCTTACCAGTC 70
Query 143162 AATGTTTTTACGAATATTTGCAT 143184
|||||||| ||||||||||||||
Sbjct 69 AATGTTTTCACGAATATTTGCAT 47
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 506726213015040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |