Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onchocerca_20flexuosa_20[genbank_20GCA_5F000951355.1_202014-09-26]
45,472 sequences; 86,175,476 total letters
Query= NC_004690.1
Length=113220
Score E
Sequences producing significant alignments: (Bits) Value
seq39641 105 5e-18
seq9851 102 6e-17
seq5858 102 6e-17
seq21486 93.3 3e-14
>seq39641
Length=587
Score = 105 bits (116), Expect = 5e-18
Identities = 110/142 (77%), Gaps = 2/142 (1%)
Strand=Plus/Minus
Query 15224 CCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTC 15283
|||||| | ||||| || ||||| || |||||||||||||||||| ||||| | |
Sbjct 326 CCAGCGAAGATCAATCGCTGTTGATCCGGTGGAATTCCTTCTTTGTCCTGGATTTT-CGC 268
Query 15284 TTT-ACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAG 15342
||| ||| | || || ||||| |||||| || || || || |||||||| || ||
Sbjct 267 TTTCACATTCTCGATAGTATCAGATGCTTCTACTTCCAATGTGATCGTTTTACCAGTAAG 208
Query 15343 AGTTTTTACAAAAATTTGCATA 15364
||||||||||||||||||||||
Sbjct 207 AGTTTTTACAAAAATTTGCATA 186
>seq9851
Length=2160
Score = 102 bits (112), Expect = 6e-17
Identities = 107/141 (76%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 15224 CCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTC 15283
|||||| | ||||| || ||||| || ||||||||| |||||||| ||||| |
Sbjct 1333 CCAGCGAAGATCAATCGCTGTTGATCTGGTGGAATTCCCTCTTTGTCCTGGATTTTCGCC 1392
Query 15284 TTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGA 15343
|| ||| | || |||||||| |||||| || || || || |||||||| || |||
Sbjct 1393 TTAACATTCTCGATGGTATCAGATGCTTCTACTTCGAATGTGATCGTTTTACCAGTAAGA 1452
Query 15344 GTTTTTACAAAAATTTGCATA 15364
||||||||||| |||||||||
Sbjct 1453 GTTTTTACAAAGATTTGCATA 1473
>seq5858
Length=3261
Score = 102 bits (112), Expect = 6e-17
Identities = 110/146 (75%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 15218 TGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATT 15277
||||| ||| | | || | |||||| || || ||||||||||||||| || |||
Sbjct 2969 TGTTTACCATCAAAAATAAGACGTTGCTGATCTAATGGAATTCCTTCTTTTTCTTGAATC 2910
Query 15278 TTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCT 15337
|| |||||||||||| || ||||| | |||| || ||||| || || ||||| ||
Sbjct 2909 CTGTCCTTTACAATTTCGATTGTATCAGAAGTTTCAACTTCTAAAGTGATTGTTTTGCCC 2850
Query 15338 GTCAGAGTTTTTACAAAAATTTGCAT 15363
||| ||||||||||||||||||||
Sbjct 2849 TTCAACGTTTTTACAAAAATTTGCAT 2824
>seq21486
Length=1089
Score = 93.3 bits (102), Expect = 3e-14
Identities = 105/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 15224 CCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTC 15283
|||||| | || | ||| || || || ||||||||||||||||| ||| ||| |
Sbjct 900 CCAGCGAAAATAAGACGCTGCTGATCTGGCGGAATTCCTTCTTTGTCTTGAATCTTGGCC 959
Query 15284 TTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGA 15343
|||||| |||| || ||||| ||| || |||| || || ||||| |||||||
Sbjct 960 TTTACATTTTCGATTGTATCAGAGGCTTCAACTTCTAGAGTGATTGTTTTGCCTGTCAAC 1019
Query 15344 GTTTTTACAAAAATTTGCATA 15364
||||||||||| |||||||||
Sbjct 1020 GTTTTTACAAAGATTTGCATA 1040
Score = 86.0 bits (94), Expect = 5e-12
Identities = 114/156 (73%), Gaps = 2/156 (1%)
Strand=Plus/Plus
Query 15209 TCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTG 15268
|| || | |||||| || || | ||||| || ||||| || |||||| || || |||
Sbjct 222 TCCTCCAGTTGTTTTCCGGCAAAGATCAATCGCTGTTGATCTGGTGGAATGCCCTCCTTG 281
Query 15269 TCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAAT 15327
|| ||| |||||| || || |||| |||||||| | || || || || || ||
Sbjct 282 TCCTGAATCTTTGCT-TTAACGTTTTCGATGGTATCCGAAGCCTCCACTTCCAACGTTAT 340
Query 15328 GGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
||||||||| || | |||||| || |||||||||||
Sbjct 341 GGTTTTACCCGTTAAAGTTTTAACGAAAATTTGCAT 376
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 361978483909152
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |