Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onchocerca_20flexuosa_20[genbank_20GCA_5F000951355.1_202014-09-26]
45,472 sequences; 86,175,476 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq21486 138 3e-27
seq2700 127 5e-24
seq13328 122 2e-22
seq39641 109 1e-18
seq9851 104 5e-17
>seq21486
Length=1089
Score = 138 bits (152), Expect = 3e-27
Identities = 159/214 (74%), Gaps = 0/214 (0%)
Strand=Plus/Plus
Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406
||| || || || | || ||||| ||||| ||||||||||| || || || | ||| ||
Sbjct 164 AAGAACCAGGTGAAGCGTCGATTCCTTCTGGATATTATAGTCCGACAGCGTACGACCATC 223
Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466
|| ||||||||||| ||||| || | | ||||||||| || || || || || || ||
Sbjct 224 CTCCAGTTGTTTTCCGGCAAAGATCAATCGCTGTTGATCTGGTGGAATGCCCTCCTTGTC 283
Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526
||||||||||||||| || ||||| | |||||| || || || || | || || ||
Sbjct 284 CTGAATCTTTGCTTTAACGTTTTCGATGGTATCCGAAGCCTCCACTTCCAACGTTATGGT 343
Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560
||||| || | ||||| || || || ||||||
Sbjct 344 TTTACCCGTTAAAGTTTTAACGAAAATTTGCATT 377
Score = 118 bits (130), Expect = 2e-21
Identities = 110/140 (79%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479
|| |||||||| || | ||| ||||||||||| || || |||||||||||||| || |||
Sbjct 584 CCTGCAAAAATAAGACGCTGCTGATCAGGAGGGATGCCCTCTTTATCCTGAATTTTGGCT 643
Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539
|| ||||| || | ||||| || |||||| || || || || || || ||||||||
Sbjct 644 TTCACATTCTCGATCGTATCCGAAGCTTCTACTTCCAGCGTTATGGTTTTGCCAGTAAGC 703
Query 104540 GTTTTTACAAATATCTGCAT 104559
|| ||||| || ||||||||
Sbjct 704 GTCTTTACGAAAATCTGCAT 723
Score = 104 bits (114), Expect = 5e-17
Identities = 107/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479
||||| ||||| || | ||| ||||| || || ||||||||||| || |||||||| ||
Sbjct 900 CCAGCGAAAATAAGACGCTGCTGATCTGGCGGAATTCCTTCTTTGTCTTGAATCTTGGCC 959
Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539
||||||||||| | ||||| | ||| || ||||| || || || || || || |
Sbjct 960 TTTACATTTTCGATTGTATCAGAGGCTTCAACTTCTAGAGTGATTGTTTTGCCTGTCAAC 1019
Query 104540 GTTTTTACAAATATCTGCAT 104559
||||||||||| || |||||
Sbjct 1020 GTTTTTACAAAGATTTGCAT 1039
Score = 86.0 bits (94), Expect = 1e-11
Identities = 70/85 (82%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 104345 CTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCG 104404
|| || || |||||||| || ||||||||||| ||||||||||| || || || | |||
Sbjct 390 CTGAGCACCAGATGTAAAGTGGATTCTTTCTGGATATTATAGTCGGAAAGCGTGCGACCA 449
Query 104405 TCTTCTAGTTGTTTTCCAGCAAAAA 104429
||||| |||||||| || |||||||
Sbjct 450 TCTTCCAGTTGTTTCCCTGCAAAAA 474
>seq2700
Length=5623
Score = 127 bits (140), Expect = 5e-24
Identities = 116/144 (81%), Gaps = 2/144 (1%)
Strand=Plus/Plus
Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476
|| || |||||||| | | ||| ||||| |||||||| |||||||| |||||||||||
Sbjct 544 TTACCTGCAAAAATCAATCGCTGCTGATCTGGAGGTATGCCTTCTTTGTCCTGAATCTTC 603
Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGG-TTCTACCTCTAGTGTAATAGTCTTACCAGT 104535
|||||||||||||| | ||||| | ||| ||| ||||| ||||| || |||||||||||
Sbjct 604 GCTTTTACATTTTCAATCGTATC-CGAGGATTCGACCTCAAGTGTGATCGTCTTACCAGT 662
Query 104536 AAGTGTTTTTACAAATATCTGCAT 104559
| || ||||| || || |||||
Sbjct 663 TAAAGTCTTTACGAAAATTTGCAT 686
>seq13328
Length=1679
Score = 122 bits (134), Expect = 2e-22
Identities = 115/147 (78%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476
|| || |||||||| || | || |||||||| || || ||||| ||||||||||| ||
Sbjct 189 TTACCTGCAAAAATAAGTCGTTGCTGATCAGGTGGGATACCTTCCTTATCCTGAATTTTA 130
Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536
|| || ||||| || | |||||| | ||||||||| || ||||| |||||||||||
Sbjct 129 GCCTTCACATTCTCAATGGTATCAGACGATTCTACCTCAAGGGTAATCGTCTTACCAGTC 70
Query 104537 AGTGTTTTTACAAATATCTGCATTTTG 104563
| |||||| || ||||| ||||| |||
Sbjct 69 AATGTTTTCACGAATATTTGCATCTTG 43
>seq39641
Length=587
Score = 109 bits (120), Expect = 1e-18
Identities = 108/140 (77%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479
||||| || || | | ||||||||| || || ||||||||||| ||||| || || |||
Sbjct 326 CCAGCGAAGATCAATCGCTGTTGATCCGGTGGAATTCCTTCTTTGTCCTGGATTTTCGCT 267
Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539
|| ||||| || | ||||| | |||||| || | ||| || || |||||||||||
Sbjct 266 TTCACATTCTCGATAGTATCAGATGCTTCTACTTCCAATGTGATCGTTTTACCAGTAAGA 207
Query 104540 GTTTTTACAAATATCTGCAT 104559
||||||||||| || |||||
Sbjct 206 GTTTTTACAAAAATTTGCAT 187
>seq9851
Length=2160
Score = 104 bits (114), Expect = 5e-17
Identities = 107/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479
||||| || || | | ||||||||| || || ||||| ||||| ||||| || || ||
Sbjct 1333 CCAGCGAAGATCAATCGCTGTTGATCTGGTGGAATTCCCTCTTTGTCCTGGATTTTCGCC 1392
Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539
|| ||||| || | |||||| | |||||| || | ||| || || |||||||||||
Sbjct 1393 TTAACATTCTCGATGGTATCAGATGCTTCTACTTCGAATGTGATCGTTTTACCAGTAAGA 1452
Query 104540 GTTTTTACAAATATCTGCAT 104559
||||||||||| || |||||
Sbjct 1453 GTTTTTACAAAGATTTGCAT 1472
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1150727583778176
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |