Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20flexuosa_20[genbank_20GCA_5F000951355.1_202014-09-26] 45,472 sequences; 86,175,476 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq21486 138 3e-27 seq2700 127 5e-24 seq13328 122 2e-22 seq39641 109 1e-18 seq9851 104 5e-17 >seq21486 Length=1089 Score = 138 bits (152), Expect = 3e-27 Identities = 159/214 (74%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | || ||||| ||||| ||||||||||| || || || | ||| || Sbjct 164 AAGAACCAGGTGAAGCGTCGATTCCTTCTGGATATTATAGTCCGACAGCGTACGACCATC 223 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || ||||||||||| ||||| || | | ||||||||| || || || || || || || Sbjct 224 CTCCAGTTGTTTTCCGGCAAAGATCAATCGCTGTTGATCTGGTGGAATGCCCTCCTTGTC 283 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||||||||||||||| || ||||| | |||||| || || || || | || || || Sbjct 284 CTGAATCTTTGCTTTAACGTTTTCGATGGTATCCGAAGCCTCCACTTCCAACGTTATGGT 343 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 ||||| || | ||||| || || || |||||| Sbjct 344 TTTACCCGTTAAAGTTTTAACGAAAATTTGCATT 377 Score = 118 bits (130), Expect = 2e-21 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 || |||||||| || | ||| ||||||||||| || || |||||||||||||| || ||| Sbjct 584 CCTGCAAAAATAAGACGCTGCTGATCAGGAGGGATGCCCTCTTTATCCTGAATTTTGGCT 643 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || ||||| || | ||||| || |||||| || || || || || || |||||||| Sbjct 644 TTCACATTCTCGATCGTATCCGAAGCTTCTACTTCCAGCGTTATGGTTTTGCCAGTAAGC 703 Query 104540 GTTTTTACAAATATCTGCAT 104559 || ||||| || |||||||| Sbjct 704 GTCTTTACGAAAATCTGCAT 723 Score = 104 bits (114), Expect = 5e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 ||||| ||||| || | ||| ||||| || || ||||||||||| || |||||||| || Sbjct 900 CCAGCGAAAATAAGACGCTGCTGATCTGGCGGAATTCCTTCTTTGTCTTGAATCTTGGCC 959 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 ||||||||||| | ||||| | ||| || ||||| || || || || || || | Sbjct 960 TTTACATTTTCGATTGTATCAGAGGCTTCAACTTCTAGAGTGATTGTTTTGCCTGTCAAC 1019 Query 104540 GTTTTTACAAATATCTGCAT 104559 ||||||||||| || ||||| Sbjct 1020 GTTTTTACAAAGATTTGCAT 1039 Score = 86.0 bits (94), Expect = 1e-11 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 104345 CTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCG 104404 || || || |||||||| || ||||||||||| ||||||||||| || || || | ||| Sbjct 390 CTGAGCACCAGATGTAAAGTGGATTCTTTCTGGATATTATAGTCGGAAAGCGTGCGACCA 449 Query 104405 TCTTCTAGTTGTTTTCCAGCAAAAA 104429 ||||| |||||||| || ||||||| Sbjct 450 TCTTCCAGTTGTTTCCCTGCAAAAA 474 >seq2700 Length=5623 Score = 127 bits (140), Expect = 5e-24 Identities = 116/144 (81%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || || |||||||| | | ||| ||||| |||||||| |||||||| ||||||||||| Sbjct 544 TTACCTGCAAAAATCAATCGCTGCTGATCTGGAGGTATGCCTTCTTTGTCCTGAATCTTC 603 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGG-TTCTACCTCTAGTGTAATAGTCTTACCAGT 104535 |||||||||||||| | ||||| | ||| ||| ||||| ||||| || ||||||||||| Sbjct 604 GCTTTTACATTTTCAATCGTATC-CGAGGATTCGACCTCAAGTGTGATCGTCTTACCAGT 662 Query 104536 AAGTGTTTTTACAAATATCTGCAT 104559 | || ||||| || || ||||| Sbjct 663 TAAAGTCTTTACGAAAATTTGCAT 686 >seq13328 Length=1679 Score = 122 bits (134), Expect = 2e-22 Identities = 115/147 (78%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || || |||||||| || | || |||||||| || || ||||| ||||||||||| || Sbjct 189 TTACCTGCAAAAATAAGTCGTTGCTGATCAGGTGGGATACCTTCCTTATCCTGAATTTTA 130 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 || || ||||| || | |||||| | ||||||||| || ||||| ||||||||||| Sbjct 129 GCCTTCACATTCTCAATGGTATCAGACGATTCTACCTCAAGGGTAATCGTCTTACCAGTC 70 Query 104537 AGTGTTTTTACAAATATCTGCATTTTG 104563 | |||||| || ||||| ||||| ||| Sbjct 69 AATGTTTTCACGAATATTTGCATCTTG 43 >seq39641 Length=587 Score = 109 bits (120), Expect = 1e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 ||||| || || | | ||||||||| || || ||||||||||| ||||| || || ||| Sbjct 326 CCAGCGAAGATCAATCGCTGTTGATCCGGTGGAATTCCTTCTTTGTCCTGGATTTTCGCT 267 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || ||||| || | ||||| | |||||| || | ||| || || ||||||||||| Sbjct 266 TTCACATTCTCGATAGTATCAGATGCTTCTACTTCCAATGTGATCGTTTTACCAGTAAGA 207 Query 104540 GTTTTTACAAATATCTGCAT 104559 ||||||||||| || ||||| Sbjct 206 GTTTTTACAAAAATTTGCAT 187 >seq9851 Length=2160 Score = 104 bits (114), Expect = 5e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 ||||| || || | | ||||||||| || || ||||| ||||| ||||| || || || Sbjct 1333 CCAGCGAAGATCAATCGCTGTTGATCTGGTGGAATTCCCTCTTTGTCCTGGATTTTCGCC 1392 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || ||||| || | |||||| | |||||| || | ||| || || ||||||||||| Sbjct 1393 TTAACATTCTCGATGGTATCAGATGCTTCTACTTCGAATGTGATCGTTTTACCAGTAAGA 1452 Query 104540 GTTTTTACAAATATCTGCAT 104559 ||||||||||| || ||||| Sbjct 1453 GTTTTTACAAAGATTTGCAT 1472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150727583778176