Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onchocerca_20flexuosa_20[genbank_20GCA_5F000951355.1_202014-09-26]
45,472 sequences; 86,175,476 total letters
Query= NC_006549.1
Length=140131
Score E
Sequences producing significant alignments: (Bits) Value
seq9851 89.7 5e-13
seq39641 84.2 2e-11
>seq9851
Length=2160
Score = 89.7 bits (98), Expect = 5e-13
Identities = 100/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 94874 AAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACG 94933
||||| |||| || |||||||| ||||| || |||||||| | ||||| ||||| ||
Sbjct 1339 AAGATCAATCGCTGTTGATCTGGTGGAATTCCCTCTTTGTCCTGGATTTTCGCCTTAACA 1398
Query 94934 GCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTC 94993
||| || |||| || || || | ||||| ||||| ||||||||||||||
Sbjct 1399 TTCTCGATGGTATCAGATGCTTCTACTTCGAATGTGATCGTTTTACCAGTAAGAGTTTTT 1458
Query 94994 ACAAAGATCTGCAT 95007
|||||||| |||||
Sbjct 1459 ACAAAGATTTGCAT 1472
>seq39641
Length=587
Score = 84.2 bits (92), Expect = 2e-11
Identities = 99/134 (74%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 94874 AAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACG 94933
||||| |||| || ||||| || ||||| ||||||||||| | ||||| || || ||
Sbjct 320 AAGATCAATCGCTGTTGATCCGGTGGAATTCCTTCTTTGTCCTGGATTTTCGCTTTCACA 261
Query 94934 GCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTC 94993
||| ||| |||| || || || | ||||| ||||| ||||||||||||||
Sbjct 260 TTCTCGATAGTATCAGATGCTTCTACTTCCAATGTGATCGTTTTACCAGTAAGAGTTTTT 201
Query 94994 ACAAAGATCTGCAT 95007
||||| || |||||
Sbjct 200 ACAAAAATTTGCAT 187
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448036391281920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |