Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onchocerca_20flexuosa_20[genbank_20GCA_5F000951355.1_202014-09-26]
45,472 sequences; 86,175,476 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq21339 131 3e-26
seq98 96.9 5e-16
>seq21339
Length=1097
Score = 131 bits (144), Expect = 3e-26
Identities = 185/260 (71%), Gaps = 0/260 (0%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| || |||||||| | | | || || || || |||||||| || || || || ||
Sbjct 477 GCGAAACGTCATCGAAAAGTGTTACGTGACAATATTCAAGGAATAACAAAACCGGCAATT 418
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|| ||| | || ||||||||||| || || ||| | || || ||| | |||||||| |
Sbjct 417 CGACGTTTAGCACGTCGTGGTGGTGTAAAACGTATTTCGGGTTTGATTTATGAAGAAACA 358
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|||| || ||||| | ||||| | | ||||| | |||||| | ||| ||
Sbjct 357 CGTGGAGTACTGAAGGTATTCCTTGAAAATGTTATACGTGATGCGGTAACATATTGTGAA 298
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
|| || |||||||| || || || | |||||| | || ||||||||||||||||||||
Sbjct 297 CATGCAAAACGTAAAACAGTTACTGCAATGGATGTTGTTTATGCATTGAAACGTCAAGGT 238
Query 16673 CGTAAGATTTATGGTTTTGG 16692
|| | ||||||| |||||
Sbjct 237 CGAACACTTTATGGATTTGG 218
>seq98
Length=22533
Score = 96.9 bits (106), Expect = 5e-16
Identities = 91/116 (78%), Gaps = 0/116 (0%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|||||||||||||||| | ||| || ||||| |||||||| || || ||||| |||||
Sbjct 6810 GCTAAGCGTCATCGCAAAGTTCTACGTGATAATATCCAAGGTATAACGAAGCCGGCTATT 6751
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGA 16548
|||||| |||| || |||||||| || ||||| | || || | | ||||||||
Sbjct 6750 CGTCGTTTGGCACGCCGTGGTGGCGTGAAGCGAATTTCAGGTCTAATTTATGAAGA 6695
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79033624632096
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |