Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20flexuosa_20[genbank_20GCA_5F000951355.1_202014-09-26] 45,472 sequences; 86,175,476 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq21339 131 3e-26 seq98 96.9 5e-16 >seq21339 Length=1097 Score = 131 bits (144), Expect = 3e-26 Identities = 185/260 (71%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || |||||||| | | | || || || || |||||||| || || || || || Sbjct 477 GCGAAACGTCATCGAAAAGTGTTACGTGACAATATTCAAGGAATAACAAAACCGGCAATT 418 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||| | || ||||||||||| || || ||| | || || ||| | |||||||| | Sbjct 417 CGACGTTTAGCACGTCGTGGTGGTGTAAAACGTATTTCGGGTTTGATTTATGAAGAAACA 358 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || ||||| | ||||| | | ||||| | |||||| | ||| || Sbjct 357 CGTGGAGTACTGAAGGTATTCCTTGAAAATGTTATACGTGATGCGGTAACATATTGTGAA 298 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || |||||||| || || || | |||||| | || |||||||||||||||||||| Sbjct 297 CATGCAAAACGTAAAACAGTTACTGCAATGGATGTTGTTTATGCATTGAAACGTCAAGGT 238 Query 16673 CGTAAGATTTATGGTTTTGG 16692 || | ||||||| ||||| Sbjct 237 CGAACACTTTATGGATTTGG 218 >seq98 Length=22533 Score = 96.9 bits (106), Expect = 5e-16 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 |||||||||||||||| | ||| || ||||| |||||||| || || ||||| ||||| Sbjct 6810 GCTAAGCGTCATCGCAAAGTTCTACGTGATAATATCCAAGGTATAACGAAGCCGGCTATT 6751 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGA 16548 |||||| |||| || |||||||| || ||||| | || || | | |||||||| Sbjct 6750 CGTCGTTTGGCACGCCGTGGTGGCGTGAAGCGAATTTCAGGTCTAATTTATGAAGA 6695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79033624632096