Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20flexuosa_20[genbank_20GCA_5F000951355.1_202014-09-26] 45,472 sequences; 86,175,476 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq21486 98.7 7e-16 seq2924 95.1 8e-15 seq13328 87.8 1e-12 >seq21486 Length=1089 Score = 98.7 bits (108), Expect = 7e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 |||| ||||| || ||||| || ||||| || || |||| ||| | || || Sbjct 168 ACCAGGTGAAGCGTCGATTCCTTCTGGATATTATAGTCCGACAGCGTACGACCATCCTCC 227 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 | ||||||||||||||| || | || |||||||| | || | ||| || |||||| | Sbjct 228 AGTTGTTTTCCGGCAAAGATCAATCGCTGTTGATCTGGTGGAATGCCCTCCTTGTCCTGA 287 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 || ||| || || || | || ||||| | || ||||| || || || |||||| Sbjct 288 ATCTTTGCTTTAACGTTTTCGATGGTATCCGAAGCCTCCACTTCCAACGTTATGGTTTTA 347 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||| || ||||| ||||| || ||||| Sbjct 348 CCCGTTAAAGTTTTAACGAAAATTTGCAT 376 >seq2924 Length=5319 Score = 95.1 bits (104), Expect = 8e-15 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||| ||||||||||||||| |||||||||||||| ||||||||| ||||| | ||||| Sbjct 2721 CTCTTTCTTCAAAGTTCTTTACAACTTTCCCTCACAGTACTTGTTTGCTATGGATCTCGT 2780 Query 20007 GGTAATATTTAGCCTTA 20023 ||| | |||||||||| Sbjct 2781 GGTCGTCTTTAGCCTTA 2797 >seq13328 Length=1679 Score = 87.8 bits (96), Expect = 1e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234 || || ||||| || || ||||| ||||| | |||| ||||| || ||| |||||| Sbjct 189 TTACCTGCAAAAATAAGTCGTTGCTGATCAGGTGGGATACCTTCCTTATCCTGAATTTTA 130 Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294 ||||||||||| | ||||| ||| || || | ||||| || ||||| ||| Sbjct 129 GCCTTCACATTCTCAATGGTATCAGACGATTCTACCTCAAGGGTAATCGTCTTACCAGTC 70 Query 38295 AAGGTTTTCACGAATATCTGCATGTT 38320 || |||||||||||||| ||||| || Sbjct 69 AATGTTTTCACGAATATTTGCATCTT 44 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334761575611232