Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onchocerca_20flexuosa_20[genbank_20GCA_5F000951355.1_202014-09-26]
45,472 sequences; 86,175,476 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq21486 98.7 7e-16
seq2924 95.1 8e-15
seq13328 87.8 1e-12
>seq21486
Length=1089
Score = 98.7 bits (108), Expect = 7e-16
Identities = 147/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168
|||| ||||| || ||||| || ||||| || || |||| ||| | || ||
Sbjct 168 ACCAGGTGAAGCGTCGATTCCTTCTGGATATTATAGTCCGACAGCGTACGACCATCCTCC 227
Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228
| ||||||||||||||| || | || |||||||| | || | ||| || |||||| |
Sbjct 228 AGTTGTTTTCCGGCAAAGATCAATCGCTGTTGATCTGGTGGAATGCCCTCCTTGTCCTGA 287
Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288
|| ||| || || || | || ||||| | || ||||| || || || ||||||
Sbjct 288 ATCTTTGCTTTAACGTTTTCGATGGTATCCGAAGCCTCCACTTCCAACGTTATGGTTTTA 347
Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCAT 38317
||||| || ||||| ||||| || |||||
Sbjct 348 CCCGTTAAAGTTTTAACGAAAATTTGCAT 376
>seq2924
Length=5319
Score = 95.1 bits (104), Expect = 8e-15
Identities = 67/77 (87%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||| ||||||||||||||| |||||||||||||| ||||||||| ||||| | |||||
Sbjct 2721 CTCTTTCTTCAAAGTTCTTTACAACTTTCCCTCACAGTACTTGTTTGCTATGGATCTCGT 2780
Query 20007 GGTAATATTTAGCCTTA 20023
||| | ||||||||||
Sbjct 2781 GGTCGTCTTTAGCCTTA 2797
>seq13328
Length=1679
Score = 87.8 bits (96), Expect = 1e-12
Identities = 107/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234
|| || ||||| || || ||||| ||||| | |||| ||||| || ||| ||||||
Sbjct 189 TTACCTGCAAAAATAAGTCGTTGCTGATCAGGTGGGATACCTTCCTTATCCTGAATTTTA 130
Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294
||||||||||| | ||||| ||| || || | ||||| || ||||| |||
Sbjct 129 GCCTTCACATTCTCAATGGTATCAGACGATTCTACCTCAAGGGTAATCGTCTTACCAGTC 70
Query 38295 AAGGTTTTCACGAATATCTGCATGTT 38320
|| |||||||||||||| ||||| ||
Sbjct 69 AATGTTTTCACGAATATTTGCATCTT 44
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334761575611232
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |