Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20flexuosa_20[genbank_20GCA_5F000951355.1_202014-09-26] 45,472 sequences; 86,175,476 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq11331 105 8e-18 seq7536 93.3 5e-14 >seq11331 Length=1923 Score = 105 bits (116), Expect = 8e-18 Identities = 102/131 (78%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 62558 AGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTA 62617 || ||||| || || ||||| |||||||||||||| || || || | ||||||||||||| Sbjct 191 AGGATAAAAGCATCAGCTAAGCCTTGAACACCAATGCCAATCGGACGATGTCTCTTATTA 132 Query 62618 GAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTG 62677 || ||| ||||| || | ||||||||||| ||| |||| |||||| | |||| | Sbjct 131 GATCGTTCCGCTTCCGGTACTGGATAATAATTGCGATCAATAACTTTATTCAAATTTTTA 72 Query 62678 ACAATTACTTT 62688 || | |||||| Sbjct 71 ACCACTACTTT 61 >seq7536 Length=2681 Score = 93.3 bits (102), Expect = 5e-14 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 62558 AGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTA 62617 || ||||| || || |||| || ||||||||||| || || || | |||||| |||||| Sbjct 1589 AGGATAAAAGCATCAGCTAGGCCCTGAACACCAATGCCAATTGGACGATGTCTATTATTA 1648 Query 62618 GAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTG 62677 || ||| ||||| || | ||||||||||| ||| ||||||||||| | |||| Sbjct 1649 GATCGTTCCGCTTCCGGTACTGGATAATAATTGCGATCAATAATTTTATTCAAATTTTCA 1708 Query 62678 ACAATTACTTT 62688 || | |||||| Sbjct 1709 ACCACTACTTT 1719 Score = 82.4 bits (90), Expect = 1e-10 Identities = 126/180 (70%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 62191 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 62250 ||| ||||| ||| || || || | |||||||| | ||| |||||||| || || | Sbjct 984 TACCTGAAAAGTTCCGGATAAGACATTACGAGTGTACAAATTGCTGGTATAAGGCTCAAT 1043 Query 62251 AGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 62310 | |||||||| | | || ||||| ||||| ||||||||||| ||||| |||| Sbjct 1044 ACTTTCATTATTGTCAAGTATCTGAGCGGTTGAAGCAGTCGGCATTAATGCCAATAATAC 1103 Query 62311 ACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATC 62370 |||||| | || || || || ||||| || || || | |||||| ||| |||| Sbjct 1104 ACTATTCCGAATGCCATACATTGCAATTTTTTCACGTAAAGTTACCCAATCCCATTGATC 1163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633271843571200