Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onchocerca_20flexuosa_20[genbank_20GCA_5F000951355.1_202014-09-26]
45,472 sequences; 86,175,476 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq11331 105 8e-18
seq7536 93.3 5e-14
>seq11331
Length=1923
Score = 105 bits (116), Expect = 8e-18
Identities = 102/131 (78%), Gaps = 0/131 (0%)
Strand=Plus/Minus
Query 62558 AGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTA 62617
|| ||||| || || ||||| |||||||||||||| || || || | |||||||||||||
Sbjct 191 AGGATAAAAGCATCAGCTAAGCCTTGAACACCAATGCCAATCGGACGATGTCTCTTATTA 132
Query 62618 GAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTG 62677
|| ||| ||||| || | ||||||||||| ||| |||| |||||| | |||| |
Sbjct 131 GATCGTTCCGCTTCCGGTACTGGATAATAATTGCGATCAATAACTTTATTCAAATTTTTA 72
Query 62678 ACAATTACTTT 62688
|| | ||||||
Sbjct 71 ACCACTACTTT 61
>seq7536
Length=2681
Score = 93.3 bits (102), Expect = 5e-14
Identities = 99/131 (76%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 62558 AGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTA 62617
|| ||||| || || |||| || ||||||||||| || || || | |||||| ||||||
Sbjct 1589 AGGATAAAAGCATCAGCTAGGCCCTGAACACCAATGCCAATTGGACGATGTCTATTATTA 1648
Query 62618 GAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTG 62677
|| ||| ||||| || | ||||||||||| ||| ||||||||||| | ||||
Sbjct 1649 GATCGTTCCGCTTCCGGTACTGGATAATAATTGCGATCAATAATTTTATTCAAATTTTCA 1708
Query 62678 ACAATTACTTT 62688
|| | ||||||
Sbjct 1709 ACCACTACTTT 1719
Score = 82.4 bits (90), Expect = 1e-10
Identities = 126/180 (70%), Gaps = 0/180 (0%)
Strand=Plus/Plus
Query 62191 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 62250
||| ||||| ||| || || || | |||||||| | ||| |||||||| || || |
Sbjct 984 TACCTGAAAAGTTCCGGATAAGACATTACGAGTGTACAAATTGCTGGTATAAGGCTCAAT 1043
Query 62251 AGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 62310
| |||||||| | | || ||||| ||||| ||||||||||| ||||| ||||
Sbjct 1044 ACTTTCATTATTGTCAAGTATCTGAGCGGTTGAAGCAGTCGGCATTAATGCCAATAATAC 1103
Query 62311 ACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATC 62370
|||||| | || || || || ||||| || || || | |||||| ||| ||||
Sbjct 1104 ACTATTCCGAATGCCATACATTGCAATTTTTTCACGTAAAGTTACCCAATCCCATTGATC 1163
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633271843571200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |